Browse Element(s) Details


Os.20642.1.S1_at

Description gb:AK107630.1
DB_XREF= gi:32992839
TID=Os.20642.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20642 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-E03, full insert sequence.
FL= gb:AK107630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0854010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08510NANA2+4594749..4595333expressed protein
LOC_Os02g08520Os.10866.1.S1_at11/112+4598612..4601355Proteasome subunit beta type 3, putative, expressed
LOC_Os02g08530Os.57430.1.S1_at8/112+4604251..4607446Protein kinase domain containing protein, expressed
LOC_Os02g08530Os.49254.1.S1_at1/112+4604251..4607446Protein kinase domain containing protein, expressed
LOC_Os02g08540Os.20642.1.S1_at10/112+4616844..4622097expressed protein
LOC_Os02g08544Os.1983.1.S1_at11/112+4625422..4628855Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os02g09050OsAffx.11943.1.S1_s_at8/112+4629504..4630087expressed protein
LOC_Os02g09060Os.17743.1.S1_at10/112+4630335..4634546Zn-finger in ubiquitin-hydrolases and other protein, expressed
LOC_Os02g09070OsAffx.11944.1.S1_at11/112+4640149..4641458zinc-binding protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20642.1.S1_at--883--1431NONE
AGAACGACAGCCTCCGTGAGGAGAT
NONE
Os.20642.1.S1_at--948--4891Chr02:4619499..4619523 (25 bp)
GCTTGCGCTGCGCTTTCAAAAGAAA
LOC_Os02g08540
Os.20642.1.S1_at--580--1251Chr02:4621587..4621611 (25 bp)
AGATTACAGATCTCGAGCTCACGGA
LOC_Os02g08540
Os.20642.1.S1_at--729--1251Chr02:4621651..4621675 (25 bp)
AGATTGATCAGCAGTCAGCCACGCA
LOC_Os02g08540
Os.20642.1.S1_at--4--1291Chr02:4621703..4621727 (25 bp)
AGATCTCAACATTCCTGTGCAGGAC
LOC_Os02g08540
Os.20642.1.S1_at--64--7971Chr02:4621737..4621761 (25 bp)
GGATCAGTCCATTGAGCTCTCCAGA
LOC_Os02g08540
Os.20642.1.S1_at--286--5911Chr02:4621750..4621774 (25 bp)
GAGCTCTCCAGATTAGTGCAGCTTT
LOC_Os02g08540
Os.20642.1.S1_at--768--7651Chr02:4621878..4621902 (25 bp)
GGGTCTAGTACCACTATAGTCCCAA
LOC_Os02g08540
Os.20642.1.S1_at--679--271Chr02:4621893..4621917 (25 bp)
ATAGTCCCAAGTGATAAGCCAAGTT
LOC_Os02g08540
Os.20642.1.S1_at--348--1971Chr02:4621958..4621982 (25 bp)
ACTGATATTGTTTCACCTGGTGCTT
LOC_Os02g08540
Os.20642.1.S1_at--263--6771Chr02:4622007..4622031 (25 bp)
GTTACAGCTCAAACTGATTCCAGTT
LOC_Os02g08540
Target Sequence 
AGAACGACAGCCTCCGTGAGGAGATGCGTACTTTGCAGANAGCTTGCGCTGCGCTTTCAAAAGAAAACGACAAGCTTGAG
ATAAGATTACAGATCTCGAGCTCACGGAACAAACCGATGATTACAGAGGATCTAAAAGGAAAGCAACAGATTGATCAGCA
GTCAGCCACGCAGTCCATCGGAGGCNGCTTCGCTCTTCCAGATCTCAACATTCCTGTGCAGGACGCTGCTGATGGATCAG
TCCATTGAGCTCTCCAGATTAGTGCAGCTTTGCTGACAGAATAGCAAGTGTACATAGAGGAATTGCAGGCTAGATGGGGG
GCACACGTCCATGCGTGAAGAGAATGACACATTTGATTAAGTTGTTAGATTACAGGGTCTAGTACCACTATAGTCCCAAG
TGATAAGCCAAGTTGTAGGCTTGTAGCCAAACAAAATTGACTAATTTAACTTCAACTGATATTGTTTCACCTGGTGCTTC
TATATTTGATGGAGCTGAAGATTGTTACAGCTCAAACTGATTCCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis