Browse Element(s) Details


Os.21026.1.S1_at

Description gb:AK111666.1
DB_XREF= gi:37988329
TID=Os.21026.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013154E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154E12, full insert sequence.
FL= gb:AK111666.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1271011/11THO complex subunit 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12660Os.3122.1.S1_at11/119+7244359..7248813Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os09g12670OsAffx.24421.1.S1_at7/119+7250983..7251387transposon protein, putative, unclassified
LOC_Os09g12680NANA9+7256831..7257067hypothetical protein
LOC_Os09g12690NANA9+7264424..7266380retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12700NANA9+7266567..7269153retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12710Os.21026.1.S1_at11/119+7270228..7275920THO complex subunit 3, putative, expressed
LOC_Os09g12720Os.51293.1.S1_at11/119+7276255..7281393Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g12720Os.51930.1.S1_at11/119+7276255..7281393Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g12730Os.53930.1.S1_at11/119+7292011..7299542RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21026.1.S1_at--389--10731Chr09:7275029..7275053 (25 bp)
TTGCATATGCTAGCGAAGATCCCTT
LOC_Os09g12710
Os.21026.1.S1_at--369--2811Chr09:7275044..7275064 (21 bp)
AAGATCCCTTCATTGACATTGCCAA
LOC_Os09g12710
Os.21026.1.S1_at--552--8111Chr09:7275171..7275195 (25 bp)
GGACGATCGATTCATCAGATTCCAT
LOC_Os09g12710
Os.21026.1.S1_at--712--1231Chr09:7275589..7275613 (25 bp)
AGATTACCGTCACCAACTATTCATT
LOC_Os09g12710
Os.21026.1.S1_at--356--9291Chr09:7275625..7275649 (25 bp)
TCCGAGTTCTGATCTGCATTTCTGA
LOC_Os09g12710
Os.21026.1.S1_at--193--3131Chr09:7275678..7275702 (25 bp)
AATTTTATTAATGTCCTGGCCGCTT
LOC_Os09g12710
Os.21026.1.S1_at--187--9271Chr09:7275691..7275715 (25 bp)
TCCTGGCCGCTTGAACTGAATTGTA
LOC_Os09g12710
Os.21026.1.S1_at--568--6091Chr09:7275734..7275758 (25 bp)
GAGTCGAGACCCATATTTTTGTTAG
LOC_Os09g12710
Os.21026.1.S1_at--775--6851Chr09:7275817..7275841 (25 bp)
GTTTGCATCATGTGGCACTGAGCCT
LOC_Os09g12710
Os.21026.1.S1_at--1013--8911Chr09:7275835..7275859 (25 bp)
TGAGCCTCAGGTGCTATGGGCGCAA
LOC_Os09g12710
Os.21026.1.S1_at--768--551Chr09:7275866..7275890 (25 bp)
ATGACCATACGTTCTTTTAAATCCA
LOC_Os09g12710
Target Sequence 
TTGCATATGCTAGCGAAGATCCCTTCATTGACATTGCCAATGTTCAAACTGGACGATCGATTCATCAGATTCCATGCAAG
GCAGCTATGAATAGTGTTGAATGGAACCCCAAGTACAACCTCCTGGCTTACGCAGGAGACGACAAGAACAAGTACCAGGC
TGATGAAGGTGTTTTCCGAATATTTGGCTTTGAAAGCACATAACTGATGGTTAGCAGATTACCGTCACCAACTATTCATT
GTAGATTGATTTCCGAGTTCTGATCTGCATTTCTGACAGCAGTTTGGGTNCTGATTGTAACTTCAATTTTATTAATGTCC
TGGCCGCTTGAACTGAATTGTATTGTACTTTGTGACTCGAGAGTCGAGACCCATATTTTTGTTAGAGTAAANTTCAGAAA
TCCTATANNNNNNNTTGTCTACGTAGGGAAAAAACAACTGCATGTTTGCATCATGTGGCACTGAGCCTCAGGTGCTATGG
GCGCAAAGTTTTATGACCATACGTTCTTTTAAATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis