Browse Element(s) Details


Os.21776.1.S1_at

Description gb:AB089272.1
DB_XREF= gi:28201162
GEN=OsDTC1
TID=Os.21776.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21776 (NCBI UniGene Cluster)
DEF=Oryza sativa OsDTC1 mRNA for putative diterpene cyclase, complete cds.
PROD=putative diterpene cyclase
FL= gb:AK068310.1 gb:AB089272.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3614010/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36110Os.19393.1.S1_at11/112+21734435..21736158Cytochrome P450 76C2, putative, expressed
LOC_Os02g36110Os.5479.1.S1_x_at1/112+21734435..21736158Cytochrome P450 76C2, putative, expressed
LOC_Os02g36120OsAffx.12369.1.S1_at11/112+21736990..21737338hypothetical protein
LOC_Os02g36120OsAffx.24912.1.S1_at1/112+21736990..21737338hypothetical protein
LOC_Os02g36130OsAffx.30582.1.S1_s_at10/112+21740011..21741181hypothetical protein
LOC_Os02g36140Os.21776.1.S1_at10/112+21759142..21767549Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36140Os.26146.1.S1_at6/112+21759142..21767549Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36150Os.23517.1.A1_at11/112+21782264..21785353Cytochrome P450 family protein, expressed
LOC_Os02g36150Os.23518.1.A1_at1/112+21782264..21785353Cytochrome P450 family protein, expressed
LOC_Os02g36160NANA2+21789415..21789867transposon protein, putative, unclassified
LOC_Os02g36170NANA2+21791799..21792944retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0009899molecular_functionent-kaurene synthase activity
GO:0009905molecular_functionent-copalyl diphosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21776.1.S1_at--376--771Chr02:21766138..21766162 (25 bp)
ATGTCGGCATTGTTTCTGATCGGAG
LOC_Os02g36140
Os.21776.1.S1_at--454--7172Chr02:21906301..21906325 (25 bp)
GTCTCCTGAATGACATTCGAGGCAT
NONE
Os.21776.1.S1_at--133--5151Chr02:21766832..21766856 (25 bp)
GCAAAATGACGAACGGCGTCTCGCT
LOC_Os02g36140
Os.21776.1.S1_at--276--4791Chr02:21766877..21766901 (25 bp)
GCTCCATGTCCGTAGACGAGGCCAA
LOC_Os02g36140
Os.21776.1.S1_at--317--1871Chr02:21766892..21766916 (25 bp)
ACGAGGCCAAAACCGAAGTGATGAA
LOC_Os02g36140
Os.21776.1.S1_at--777--1111Chr02:21766908..21766932 (25 bp)
AGTGATGAAGCGCATCGACGCCTCA
LOC_Os02g36140
Os.21776.1.S1_at--301--10151Chr02:21766977..21767001 (25 bp)
TATCCCGAGGCCGTGCAAGCAGCTG
LOC_Os02g36140
Os.21776.1.S1_at--347--3971Chr02:21767049..21767073 (25 bp)
CGGATTCAGTTCTCCCAAAGAGATG
LOC_Os02g36140
Os.21776.1.S1_at--547--6571Chr02:21767127..21767151 (25 bp)
GATTCATCTCTGTCACTTTTTCTTT
LOC_Os02g36140
Os.21776.1.S1_at--754--10471Chr02:21767232..21767256 (25 bp)
TTACACAGTTTGATCGATGGCCGCA
LOC_Os02g36140
Os.21776.1.S1_at--907--6371Chr02:21767243..21767614 (25 bp)
GATCGATGGCCGCACTAATCAGAAT
NONE
Target Sequence 
ATGTCGGCATTGTTTCTGATCGGAGAAAAGCTCCCGGAGGGTNTTGTCGAACTTGAAGAATACGATGAGNTGTTCAGGCT
GATGGGCACTTGCGGCCGTCTCCTGAATGACATTCGAGGCATTGAGAGGGAGGAGTCGGACGGCAAAATGACGAACGGCG
TCTCGCTGCTCGTNCACGCTAGCGGCGGCTCCATGTCCGTAGACGAGGCCAAAACCGAAGTGATGAAGCGCATCGACGCC
TCACGGAGGAAGCTGCTGAGCTTGGTCGTCNGCGANCAGGAAGGCCCTATCCCGAGGCCGTGCAAGCAGCTGTTCTGGAA
GATGTGCAAGATTCTTCACCTGTTCTACTACCAGACCGACGGATTCAGTTCTCCCAAAGAGATGGTCAGCGCAGNTGGAT
GCNGTCATCAANGAGCCACTTCAACTCAGATNATTGTAGATTCATCTCTGTCACTTTTTCTTTTCTTTTTTTTGGATACT
NAAGTACTACCAGTGTTGCATNTAAAAGCNTGAGGTAATCAGAATGTGGANNNNNNNNTTGGGATTACACAGTTTGATCG
ATGGCCGCACTAATCAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis