Browse Element(s) Details


Os.23517.1.A1_at

Description gb:AK107418.1
DB_XREF= gi:32992627
TID=Os.23517.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-F04, full insert sequence.
FL= gb:AK107418.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3615011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36140Os.21776.1.S1_at10/112+21759142..21767549Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36140Os.26146.1.S1_at6/112+21759142..21767549Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os02g36150Os.23517.1.A1_at11/112+21782264..21785353Cytochrome P450 family protein, expressed
LOC_Os02g36150Os.23518.1.A1_at1/112+21782264..21785353Cytochrome P450 family protein, expressed
LOC_Os02g36160NANA2+21789415..21789867transposon protein, putative, unclassified
LOC_Os02g36170NANA2+21791799..21792944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36180NANA2+21799127..21799579transposon protein, putative, unclassified
LOC_Os02g36190Os.23518.1.A1_at9/112+21804506..21807588Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23517.1.A1_at--151--591Chr02:21784754..21784778 (25 bp)
ATGCCGTGAGACAAGCCAAGTCATG
LOC_Os02g36150
Os.23517.1.A1_at--1159--1151Chr02:21784772..21784796 (25 bp)
AGTCATGGGCTACGATATACCAAAG
LOC_Os02g36150
Os.23517.1.A1_at--291--4331Chr02:21784791..21784815 (25 bp)
CCAAAGGGAACATCTGTGTTCGTAA
LOC_Os02g36150
Os.23517.1.A1_at--580--8651Chr02:21784821..21784845 (25 bp)
TGGGCGATATGTAGAGACTCCAGGT
LOC_Os02g36150
Os.23517.1.A1_at--1067--5211Chr02:21784910..21784934 (25 bp)
GAATAACTTCGAATTTCTTCCATTT
LOC_Os02g36150
Os.23517.1.A1_at--1103--8191Chr02:21785037..21785061 (25 bp)
GGAATGGCGCCTAAGGACCTTGATA
LOC_Os02g36150
Os.23517.1.A1_at--486--9551Chr02:21785095..21785119 (25 bp)
TCATTACCCTAAATATATGCCCTAT
LOC_Os02g36150
Os.23517.1.A1_at--666--10131Chr02:21785110..21785134 (25 bp)
TATGCCCTATTACTCATATTGCTCC
LOC_Os02g36150
Os.23517.1.A1_at--600--7051Chr02:21785144..21785168 (25 bp)
GTAACATCCGTCCTAATGGAATGCA
LOC_Os02g36150
Os.23517.1.A1_at--774--9771Chr02:21785157..21785181 (25 bp)
TAATGGAATGCATCCTCAAAGACAG
LOC_Os02g36150
Os.23517.1.A1_at--97--1071Chr02:21785228..21785252 (25 bp)
AGGGTTTATATGTATCCTATGTACA
LOC_Os02g36150
Target Sequence 
ATGCCGTGAGACAAGCCAAGTCATGGGCTACGATATACCAAAGGGAACATCTGTGTTCGTAAATATGTGGGCGATATGTA
GAGACTCCAGGTNCTGGGAGGATCCTGAGGAGTATAAACCAGAGAGATTCGAAAATAATAGTGTAGATTATAAAGGGAAT
AACTTCGAATTTCTTCCATTTGGCTCTGGTCGTANAATTTGTCCAGGTATAAACCTTGGGGTGGCCAACTTGGAGCTACC
ATTAGCTAGTCTTCTTTATCATTTTGNCTGGAAGCTACCCAATGGAATGGCGCCTAAGGACCTTGATATGCATNAGACGT
NTGGAATGGTTGCAGCTAAACTCATTACCCTAAATATATGCCCTATTACTCATATTGCTCCAAGNAGTGNGTAACATCCG
TCCTAATGGAATGCATCCTCAAAGACAGNGCATATATATAGTAGTTTATTGAAAAAATAACGTGCTGGGANAAAAGGGTT
TATATGTATCCTATGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23517.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis