Browse Element(s) Details


Os.21891.1.S1_at

Description gb:AK101959.1
DB_XREF= gi:32987168
TID=Os.21891.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075O07, full insert sequence.
FL= gb:AK101959.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4475011/11ZMMHCF1, putative, expressed
LOC_Os06g447703/11hypothetical protein
LOC_Os04g565501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44730NANA6+26998096..27001620retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g44740NANA6+27002388..27005408retrotransposon protein, putative, unclassified
LOC_Os06g44750Os.21891.1.S1_at11/116+27024454..27028231ZMMHCF1, putative, expressed
LOC_Os06g44750OsAffx.28107.1.S1_at3/116+27024454..27028231ZMMHCF1, putative, expressed
LOC_Os06g44760OsAffx.26408.1.S1_at1/116+27042127..27044831hypothetical protein
LOC_Os06g44770OsAffx.28107.1.S1_at10/116+27045715..27046929hypothetical protein
LOC_Os06g44770Os.21891.1.S1_at3/116+27045715..27046929hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21891.1.S1_at--973--9271Chr06:27027663..27027687 (25 bp)
TCCGGCGTGAACGTGGACTTCACAA
LOC_Os06g44750
Os.21891.1.S1_at--925--1551Chr06:27027813..27027837 (25 bp)
AGCTACTCCGGTAACAACATTCCTT
LOC_Os06g44750
Os.21891.1.S1_at--644--2511Chr06:27027828..27027852 (25 bp)
AACATTCCTTATGCTGCTGCAGCAG
LOC_Os06g44750
Os.21891.1.S1_at--307--5071Chr06:27027849..27027873 (25 bp)
GCAGCTATGACTTCTGGATCAGCAC
LOC_Os06g44750
Os.21891.1.S1_at--898--7511Chr06:27027909..27027933 (25 bp)
GTGGCGAGTAACACGAGCACGGCTC
LOC_Os06g44750
Os.21891.1.S1_at--841--1031Chr06:27027967..27027991 (25 bp)
AGGTGGACTTACTGGCTCTATTAGC
LOC_Os06g44750
Os.21891.1.S1_at--369--6931Chr06:27028012..27028036 (25 bp)
GTAGGCCTAGGACTGACATGGAACT
LOC_Os06g44750
Os.21891.1.S1_at--530--2331Chr06:27028042..27028066 (25 bp)
AAAGTTTTGGCTGCTGATGCATGCA
LOC_Os06g44750
Os.21891.1.S1_at--864--6892Chr06:27028140..27028164 (25 bp)
GTATCACCAGTGTTTCTAATTCAAG
LOC_Os06g44750
Os.21891.1.S1_at--604--2532Chr06:27028176..27028200 (25 bp)
AACTAGTTCCATTGTCAGCTACTCC
LOC_Os06g44750
Os.21891.1.S1_at--571--7114Chr06:27028189..27028213 (25 bp)
GTCAGCTACTCCATTTGTTTCATAT
LOC_Os06g44750
Target Sequence 
TCCGGCGTGAACGTGGACTTCACAATGGGGACTAGCAGCCACAGCGGCAGCAACAGCAACAGCAGCAGCAGCAGCGCCAT
ATGGGGCACAGCCGCCGGCGCAGCGATGGGGAGGCAGCAAAACGGCGGCANCAGCAACAAGCAGAGCAACAGCTACTCCG
GTAACAACATTCCTTATGCTGCTGCAGCAGCTATGACTTCTGGATCAGCACTCTACGGGGGCTCCACCGGTAGCAACGGG
ACATGGGTGGCGAGTAACACGAGCACGGCTCCCCACTTCTACAACTNTTTGTTTGGGATGGAGTAGGTGGACTTACTGGC
TCTATTAGCTTCATTAGCTGAAACGAGTGGTAGGCCTAGGACTGACATGGAACTGATCAAAAGTTTTGGCTGCTGATGCA
TGCAGGAATGCAATGCAATGCATCCTTAAGATTATTCTTTTNCTTCCCTNGACATAGTCCTGTAGCAGAGAAACTCATGT
ATCACCAGTGTTTCTAATTCAAGCNCATTTTTTTAACTAGTTCCATTGTCAGCTACTCCATTTGTTTCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis