Browse Element(s) Details


OsAffx.28107.1.S1_at

Description tigr:9634.m04338
TID=OsAffx.28107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4477010/11hypothetical protein
LOC_Os06g447503/11ZMMHCF1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44750Os.21891.1.S1_at11/116+27024454..27028231ZMMHCF1, putative, expressed
LOC_Os06g44750OsAffx.28107.1.S1_at3/116+27024454..27028231ZMMHCF1, putative, expressed
LOC_Os06g44760OsAffx.26408.1.S1_at1/116+27042127..27044831hypothetical protein
LOC_Os06g44770OsAffx.28107.1.S1_at10/116+27045715..27046929hypothetical protein
LOC_Os06g44770Os.21891.1.S1_at3/116+27045715..27046929hypothetical protein
LOC_Os06g44780NANA6+27053294..27053782hypothetical protein
LOC_Os06g44790OsAffx.15929.2.S1_s_at11/116+27057830..27060488hypothetical protein
LOC_Os06g44790OsAffx.15929.2.S1_at7/116+27057830..27060488hypothetical protein
LOC_Os06g44800OsAffx.24518.2.S1_x_at10/116+27063210..27066211hAT family dimerisation domain containing protein, expressed
LOC_Os06g44800OsAffx.19258.2.S1_x_at3/116+27063210..27066211hAT family dimerisation domain containing protein, expressed
LOC_Os06g44810Os.53397.1.S1_at11/116+27067988..27073409expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28107.1.S1_at--885--3531NONE
CATCTACCGTGGTGTCACTAGGGAT
NONE
OsAffx.28107.1.S1_at--447--9952Chr06:27025145..27025423 (25 bp)
TACCGTGGTGTCACTAGGGATGTTG
LOC_Os06g44750
OsAffx.28107.1.S1_at--831--7852Chr06:27025424..27025448 (25 bp)
GGTATTGGGAAAATGCATCAGGCAC
LOC_Os06g44750
OsAffx.28107.1.S1_at--922--5512Chr06:27025432..27025456 (25 bp)
GAAAATGCATCAGGCACCGGTGGAC
LOC_Os06g44750
OsAffx.28107.1.S1_at--1105--5111Chr06:27045849..27046318 (25 bp)
GCAAAGGCCGCCAAGAGGGAGTACT
LOC_Os06g44770
OsAffx.28107.1.S1_at--533--4531Chr06:27045843..27046312 (25 bp)
GCCGCCAAGAGGGAGTACTACATAT
LOC_Os06g44770
OsAffx.28107.1.S1_at--94--2031Chr06:27045827..27045851 (25 bp)
ACTACATATGTGTCAACAGCCTCCG
LOC_Os06g44770
OsAffx.28107.1.S1_at--685--271Chr06:27045822..27045846 (25 bp)
ATATGTGTCAACAGCCTCCGCAAGA
LOC_Os06g44770
OsAffx.28107.1.S1_at--255--7451Chr06:27045818..27045842 (25 bp)
GTGTCAACAGCCTCCGCAAGAACTC
LOC_Os06g44770
OsAffx.28107.1.S1_at--803--711Chr06:27045776..27045800 (25 bp)
ATGATCCAGATAGCCGCGATGAGGT
LOC_Os06g44770
OsAffx.28107.1.S1_at--667--4351Chr06:27045771..27045795 (25 bp)
CCAGATAGCCGCGATGAGGTGCTCG
LOC_Os06g44770
Target Sequence 
CATCTACCGTGGTGTCACTAGGGATGTTGGGTATTGGGAAAATGCATCAGGCACCGGTGGACGGGGAGGTACGAGGCGCA
CCTGTGGGACAATAGCTGCCGCCGGGAAGGCCAAAGCCGCAAAGGCCGCCAAGAGGGAGTACTACATATGTGTCAACAGC
CTCCGCAAGAACTCCACGACTCCTGCAGCACATGATCCAGATAGCCGCGATGAGGTGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis