Browse Element(s) Details


OsAffx.15929.2.S1_at

Description tigr:9634.m04340
TID=OsAffx.15929.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g447907/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44760OsAffx.26408.1.S1_at1/116+27042127..27044831hypothetical protein
LOC_Os06g44770OsAffx.28107.1.S1_at10/116+27045715..27046929hypothetical protein
LOC_Os06g44770Os.21891.1.S1_at3/116+27045715..27046929hypothetical protein
LOC_Os06g44780NANA6+27053294..27053782hypothetical protein
LOC_Os06g44790OsAffx.15929.2.S1_s_at11/116+27057830..27060488hypothetical protein
LOC_Os06g44790OsAffx.15929.2.S1_at7/116+27057830..27060488hypothetical protein
LOC_Os06g44800OsAffx.24518.2.S1_x_at10/116+27063210..27066211hAT family dimerisation domain containing protein, expressed
LOC_Os06g44800OsAffx.19258.2.S1_x_at3/116+27063210..27066211hAT family dimerisation domain containing protein, expressed
LOC_Os06g44810Os.53397.1.S1_at11/116+27067988..27073409expressed protein
LOC_Os06g44820OsAffx.15926.1.S1_at10/116+27074173..27075641hypothetical protein
LOC_Os06g44830NANA6+27081760..27082020hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010189biological_processvitamin E biosynthesis
GO:0042362biological_processfat-soluble vitamin biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004659molecular_functionprenyltransferase activity
GO:0010176molecular_functionhomogentisate phytyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15929.2.S1_at--776--4191NONE
GCCTCTCCGGCGAGAAATGGTAAAG
NONE
OsAffx.15929.2.S1_at--88--9491NONE
TCTCCGGCGAGAAATGGTAAAGGGC
NONE
OsAffx.15929.2.S1_at--307--9371Chr06:27059367..27059391 (25 bp)
TCGACCAACAACTAGTTCTGCTGAT
LOC_Os06g44790
OsAffx.15929.2.S1_at--77--3271Chr06:27059362..27059386 (25 bp)
CAACAACTAGTTCTGCTGATGCTTC
LOC_Os06g44790
OsAffx.15929.2.S1_at--717--1951Chr06:27059357..27059381 (25 bp)
ACTAGTTCTGCTGATGCTTCGGGAC
LOC_Os06g44790
OsAffx.15929.2.S1_at--167--10591Chr06:27059352..27059376 (25 bp)
TTCTGCTGATGCTTCGGGACAACCG
LOC_Os06g44790
OsAffx.15929.2.S1_at--705--9471Chr06:27059351..27059375 (25 bp)
TCTGCTGATGCTTCGGGACAACCGC
LOC_Os06g44790
OsAffx.15929.2.S1_at--966--6491Chr06:27058603..27058774 (25 bp)
GATAGATAAGCCAACTCTCCCATTA
LOC_Os06g44790
OsAffx.15929.2.S1_at--1098--6451Chr06:27058599..27058620 (22 bp)
GATAAGCCAACTCTCCCATTAGCAT
LOC_Os06g44790
OsAffx.15929.2.S1_at--636--4291NONE
CCTTCGCTGCTATGATAAAATCCGC
NONE
OsAffx.15929.2.S1_at--1094--9331NONE
TCGCTGCTATGATAAAATCCGCAAG
NONE
Target Sequence 
GCCTCTCCGGCGAGAAATGGTAAAGGGCCAGTTTCTTTGTCCAGCCAAAGGACCCAAGGTCCTTCCTTCGATCAATGTCA
GAAATTCTTTGGTTGGGAATCCTCCCACCACAGAATACCACATCGACCAACAACTAGTTCTGCTGATGCTTCGGGACAAC
CGCTACAATCTTCAGCTGAAGCACATGATCATCAAGCACTTAGCATAGTCTCAGTTTCGCTGCTAGCTGTTGAGAATTTG
TCCGATGTGTCTCCCTTGTTCCTCACTGGTTTGCTGGAGGCAGTGGTAGCAGCTCTTTTCATGAACATCTATATCGTTGG
ATTGAATCAGTTGTTCGACATTGAGATAGATAAGCCAACTCTCCCATTAGCATCTGTGGAATATTCTCCTGCAACTGGAG
TTGCACTTGTATCAGCCTTCGCTGCTATGATAAAATCCGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15929.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis