Browse Element(s) Details


Os.22455.1.A1_at

Description gb:AK073396.1
DB_XREF= gi:32983419
TID=Os.22455.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22455 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033045F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033045F21, full insert sequence.
FL= gb:AK073396.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g434409/11Single-strand binding protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43390Os.7516.1.S1_at11/115+25146490..25149994Signal recognition particle 54 kDa protein 2, putative, expressed
LOC_Os05g43400OsAffx.15084.1.S1_at11/115+25152634..25154489hypothetical protein
LOC_Os05g43410NANA5+25156077..25162231retrotransposon protein, putative, unclassified
LOC_Os05g43420NANA5+25162852..25166143retrotransposon protein, putative, unclassified
LOC_Os05g43440Os.22455.1.A1_at9/115+25171607..25176541Single-strand binding protein family protein, expressed
LOC_Os05g43450Os.53504.1.S1_at11/115+25177479..25180516Transcription initiation factor IIF, beta subunit family protein, expressed
LOC_Os05g43460Os.14885.1.S1_at9/115+25183001..25184001expressed protein
LOC_Os05g43470Os.5176.1.S1_at10/115+25184696..25189013chloroplast outer membrane protein, putative, expressed
LOC_Os05g43480Os.10062.1.S1_at10/115+25191183..25196932Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os05g43490Os.18454.2.S1_a_at11/115+25199902..25203459F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003697molecular_functionsingle-stranded DNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22455.1.A1_at--533--2691Chr05:25174135..25174154 (20 bp)
AAGCAGGCCAGGAGTACAGGTTCAA
LOC_Os05g43440
Os.22455.1.A1_at--99--9851Chr05:25171953..25171977 (25 bp)
TAAAGTGGATACGTGCAGGCTCAAC
LOC_Os05g43440
Os.22455.1.A1_at--354--3751Chr05:25171934..25171958 (25 bp)
CTCAACGATGATGCTGGCCTCTCAA
LOC_Os05g43440
Os.22455.1.A1_at--395--5771Chr05:25171896..25171920 (25 bp)
GACGATGCTGCTTCACCGAAGCGAA
LOC_Os05g43440
Os.22455.1.A1_at--967--4171Chr05:25171834..25171858 (25 bp)
CCCTTCCAGTCGTATTTTCATTATC
LOC_Os05g43440
Os.22455.1.A1_at--951--8171Chr05:25171735..25171759 (25 bp)
GGAACGTATTGCTTTGGTGGCTATA
LOC_Os05g43440
Os.22455.1.A1_at--653--7531NONE
GTGGCTATACGTCTTGTCCCGACAA
NONE
Os.22455.1.A1_at--554--7691Chr05:25171653..25171677 (25 bp)
GGGTAGATGCGCTCAGCCTAACTGC
LOC_Os05g43440
Os.22455.1.A1_at--525--9812Chr06:29765836..29765955 (24 bp)
TAACTGCTCGTGTCGCAACTCGCAA
NONE
Os.22455.1.A1_at--1029--1991Chr05:25171618..25171642 (25 bp)
ACTCGCAAATGCAGCGTCTTTTTCT
LOC_Os05g43440
Os.22455.1.A1_at--281--1631Chr05:25171606..25171630 (25 bp)
AGCGTCTTTTTCTGTCGAGTTGTCA
NONE
Target Sequence 
AAGCAGGCCAGGAGTACAGGTTCAAAAGATAAAGTGGATACGTGCAGGCTCAACGATGATGCTGGCCTCTCAAAGAAAAG
AAAAACGACGATGCTGCTTCACCGAAGCGAAATTTGTTGTAGCAGGCATGTGAACCTTGTCCTGGCCNCCCTTCCAGTCG
TATTTTCATTATCAACATCCTTTAATGTACTCTTGATTAACATNTTAGCAGTCAAATTTACAGNAGTGTCATGGTGTGTA
TGTGTTGGGAACGTATTGCTTTGGTGGCTATACGTCTTGTCCCGACAACCCGACGATGTAACGATGAATTCTCGTTGTTT
TGGTACCCGGGGTAGATGCGCTCAGCCTAACTGCTCGTGTCGCAACTCGCAAATGCAGCGTCTTTTTCTGTCGAGTTGTC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22455.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis