Browse Element(s) Details


Os.7516.1.S1_at

Description gb:AB115419.1
DB_XREF= gi:33235564
GEN=srp54-2
TID=Os.7516.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7516 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) srp54-2 mRNA for signal recognition particle 54kDa subunit, complete cds.
PROD=signal recognition particle 54kDa subunit
FL= gb:AK068958.1 gb:AB115419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4339011/11Signal recognition particle 54 kDa protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43340OsAffx.22171.1.S1_at1/115+25121226..25124129retrotransposon protein, putative, unclassified
LOC_Os05g43350NANA5+25125622..25130445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43360Os.11069.1.S1_at11/115+25131326..25134653NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g43370Os.49125.1.S1_s_at6/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43370Os.6027.1.A1_at1/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43370OsAffx.15220.3.S1_at1/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43380Os.23126.1.S1_at11/115+25141682..25144197Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os05g43390Os.7516.1.S1_at11/115+25146490..25149994Signal recognition particle 54 kDa protein 2, putative, expressed
LOC_Os05g43400OsAffx.15084.1.S1_at11/115+25152634..25154489hypothetical protein
LOC_Os05g43410NANA5+25156077..25162231retrotransposon protein, putative, unclassified
LOC_Os05g43420NANA5+25162852..25166143retrotransposon protein, putative, unclassified
LOC_Os05g43440Os.22455.1.A1_at9/115+25171607..25176541Single-strand binding protein family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006605biological_processprotein targeting
GO:0006617biological_processSRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
GO:0045038biological_processprotein import into chloroplast thylakoid membrane
GO:0005737cellular_componentcytoplasm
GO:0005786cellular_componentsignal recognition particle (sensu Eukaryota)
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0003729molecular_functionmRNA binding
GO:0005048molecular_functionsignal sequence binding
GO:0005525molecular_functionGTP binding
GO:0008312molecular_function7S RNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7516.1.S1_at--142--5311Chr05:25147500..25147524 (25 bp)
GAAGGAACCTTTACTCTCAGAGTAT
LOC_Os05g43390
Os.7516.1.S1_at--215--5251Chr05:25147459..25147483 (25 bp)
GAATCTTCTTAACATGGGTCCTATT
LOC_Os05g43390
Os.7516.1.S1_at--360--1331Chr05:25147101..25147125 (25 bp)
AGAGCTTGATAGCACAAACCCAAAG
LOC_Os05g43390
Os.7516.1.S1_at--654--9831Chr05:25147056..25147080 (25 bp)
TAAACGGGTCGCTCGAGGATCTGGC
LOC_Os05g43390
Os.7516.1.S1_at--465--7371Chr05:25147016..25147040 (25 bp)
GTGACCGACATGCTGGAAGAGTACA
LOC_Os05g43390
Os.7516.1.S1_at--736--5251Chr05:25146988..25147012 (25 bp)
GAATCGCCAAGGTGTGTAGCAAGTT
LOC_Os05g43390
Os.7516.1.S1_at--189--8151Chr05:25146915..25146939 (25 bp)
GGACACGCTGAACACCATTAACAAT
LOC_Os05g43390
Os.7516.1.S1_at--47--3071Chr05:25146893..25146917 (25 bp)
AATCTCATCCCTAAGCAATTGTTGA
LOC_Os05g43390
Os.7516.1.S1_at--313--7431Chr05:25146856..25146880 (25 bp)
GTGTTAATCCGTTGCAGAGCGTCAT
LOC_Os05g43390
Os.7516.1.S1_at--208--4931Chr05:25146747..25146771 (25 bp)
GCTTGATGCAAACACTCGGCTAACA
LOC_Os05g43390
Os.7516.1.S1_at--1161--8951Chr05:25146732..25146756 (25 bp)
TCGGCTAACATTGAGGGCCTGGTTT
LOC_Os05g43390
Target Sequence 
GAAGGAACCTTTACTCTCAGAGTATTCTACGANCTGTTCCAGAATCTTCTTAACATGGGTCCTATTGGACAGGTTTTATC
TATGATACCTGGATTTAGGTCTGAACTGATGCCAAAAGGACATGACAAGGAAAGCCAAGCAAAGATTAAGCGGTACATGA
CTATTATGGATTCTATGACAAATGCAGAGCTTGATAGCACAAACCCAAAGCTGATGAGTGAATCACGAATTAAACGGGTC
GCTCGAGGATCTGGCAGGACCATGAAAGATGTGACCGACATGCTGGAAGAGTACAAGAGAATCGCCAAGGTGTGTAGCAA
GTTGAAGAAGAAGTTGCCCAAGAATATGGACAGGAATGTTATGAACAACAAGGACACGCTGAACACCATTAACAATCTCA
TCCCTAAGCAATTGTTGAATCAGATCGGTGGTGTTAATCCGTTGCAGAGCGTCATGAAGCAAATGGGCTTAAAGACATGA
ACGAAATGTTTTGGGAGCATGTGCTGATGTTAATTGATATTTGCAAATATATATGATGGGCTTGATGCAAACACTCGGCT
AACATTGAGGGCCTGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis