Browse Element(s) Details


OsAffx.15220.3.S1_at

Description gb:NM_191019.1
DB_XREF= gi:34909121
GEN=P0468B07.4
TID=OsAffx.15220.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0468B07.4 (P0468B07.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g433701/11tRNA pseudouridine synthase D family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43310Os.5215.1.S1_at11/115+25110262..25111505Photosystem II reaction centre W protein containing protein, expressed
LOC_Os05g43320OsAffx.27290.1.S1_at11/115+25111479..25113208hypothetical protein
LOC_Os05g43330Os.29067.2.S1_at3/115+25117442..25117980hypothetical protein
LOC_Os05g43340OsAffx.22171.1.S1_at1/115+25121226..25124129retrotransposon protein, putative, unclassified
LOC_Os05g43350NANA5+25125622..25130445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43360Os.11069.1.S1_at11/115+25131326..25134653NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g43370Os.49125.1.S1_s_at6/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43370Os.6027.1.A1_at1/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43370OsAffx.15220.3.S1_at1/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43380Os.23126.1.S1_at11/115+25141682..25144197Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os05g43390Os.7516.1.S1_at11/115+25146490..25149994Signal recognition particle 54 kDa protein 2, putative, expressed
LOC_Os05g43400OsAffx.15084.1.S1_at11/115+25152634..25154489hypothetical protein
LOC_Os05g43410NANA5+25156077..25162231retrotransposon protein, putative, unclassified
LOC_Os05g43420NANA5+25162852..25166143retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15220.3.S1_at--878--8811Chr01:34677707..34677731 (25 bp)
TGTTGTAGTGTTGCGCGCAGTGATC
NONE
OsAffx.15220.3.S1_at--608--6391Chr01:34677675..34677699 (25 bp)
GATCGATCTCTCTCGATGCATCGAG
NONE
OsAffx.15220.3.S1_at--20--4571Chr01:34677651..34677675 (25 bp)
GCGCCTTCGTGTACAGCTTAATTAT
NONE
OsAffx.15220.3.S1_at--167--7032Chr01:34677613..34677637 (25 bp)
GTACATGGACCAGACAGATCTTTTA
NONE
OsAffx.15220.3.S1_at--742--2131Chr01:34677571..34677595 (25 bp)
ACAGTGCAAGCCTTTTTCTCCTCTG
NONE
OsAffx.15220.3.S1_at--643--5131Chr01:34677547..34677571 (25 bp)
GCAAATCTCTGCAACTGCTTTTCTC
NONE
OsAffx.15220.3.S1_at--250--9511NONE
TCTCTGATCTTTGTGTGTCTCGCTA
NONE
OsAffx.15220.3.S1_at--857--7451NONE
GTGTCTCGCTACTGATAGAGCTCTC
NONE
OsAffx.15220.3.S1_at--595--1371Chr01:34676993..34677017 (25 bp)
AGAGCTCTCTTTCTGCATGGTTTCA
NONE
OsAffx.15220.3.S1_at--235--2631Chr01:34676951..34676975 (25 bp)
AACCGTGTGGCCAGTAGAAGCTCAT
NONE
OsAffx.15220.3.S1_at--1110--5392Chr05:25137931..25138013 (24 bp)
GAAGCTCATCTGGAGCTGCTTTGCA
LOC_Os05g43370
Target Sequence 
TGTTGTAGTGTTGCGCGCAGTGATCGCCGCTCGATCGATCTCTCTCGATGCATCGAGCGCCTTCGTGTACAGCTTAATTA
TAACAGCTGTAAATGTACATGGACCAGACAGATCTTTTACTGGGGTCTCTCCTGCTACAGTGCAAGCCTTTTTCTCCTCT
GCAAATCTCTGCAACTGCTTTTCTCCTTTCTCTCTGATCTTTGTGTGTCTCGCTACTGATAGAGCTCTCTTTCTGCATGG
TTTCACATGGACCCCACCTCACAACCGTGTGGCCAGTAGAAGCTCATCTGGAGCTGCTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15220.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis