Browse Element(s) Details


OsAffx.27290.1.S1_at

Description tigr:9633.m04028
TID=OsAffx.27290.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4332011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43264NANA5+25092528..25093185NA
LOC_Os05g43280Os.7504.2.S1_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S2_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280OsAffx.15082.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43290OsAffx.15083.1.S1_at11/115+25103589..25104529hypothetical protein
LOC_Os05g43300Os.15545.1.S1_at11/115+25105050..25109889H1flk, putative, expressed
LOC_Os05g43310Os.5215.1.S1_at11/115+25110262..25111505Photosystem II reaction centre W protein containing protein, expressed
LOC_Os05g43320OsAffx.27290.1.S1_at11/115+25111479..25113208hypothetical protein
LOC_Os05g43330Os.29067.2.S1_at3/115+25117442..25117980hypothetical protein
LOC_Os05g43340OsAffx.22171.1.S1_at1/115+25121226..25124129retrotransposon protein, putative, unclassified
LOC_Os05g43350NANA5+25125622..25130445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43360Os.11069.1.S1_at11/115+25131326..25134653NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g43370Os.49125.1.S1_s_at6/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43370Os.6027.1.A1_at1/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43370OsAffx.15220.3.S1_at1/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27290.1.S1_at--827--2311Chr05:25113133..25113157 (25 bp)
AAAGGGAAAGGTGCTCTCCAGAGCA
LOC_Os05g43320
OsAffx.27290.1.S1_at--1144--1351Chr05:25113114..25113138 (25 bp)
AGAGCACCGACCAGGTGTTGCCGTT
LOC_Os05g43320
OsAffx.27290.1.S1_at--340--1051Chr05:25113102..25113126 (25 bp)
AGGTGTTGCCGTTCTCCACATCACG
LOC_Os05g43320
OsAffx.27290.1.S1_at--978--10711Chr05:25112793..25112817 (25 bp)
TTGAATGGATACCACCTTGTCCGAC
LOC_Os05g43320
OsAffx.27290.1.S1_at--179--10691Chr05:25112777..25112801 (25 bp)
TTGTCCGACCAACCCAGAATATCCT
LOC_Os05g43320
OsAffx.27290.1.S1_at--130--2611Chr05:25112767..25112791 (25 bp)
AACCCAGAATATCCTTCGTACGACA
LOC_Os05g43320
OsAffx.27290.1.S1_at--852--9371Chr05:25112752..25112776 (25 bp)
TCGTACGACACAAAAGCTCCTCGAA
LOC_Os05g43320
OsAffx.27290.1.S1_at--318--10631Chr05:25111571..25111595 (25 bp)
TTGAAAGCAATTAACCTGGGAACCA
LOC_Os05g43320
OsAffx.27290.1.S1_at--242--8651Chr05:25111555..25111579 (25 bp)
TGGGAACCATCCTTGCAACTGCAGG
LOC_Os05g43320
OsAffx.27290.1.S1_at--556--2551Chr05:25111539..25111563 (25 bp)
AACTGCAGGTGTACCATTCCTTTCA
LOC_Os05g43320
OsAffx.27290.1.S1_at--995--71Chr05:25111524..25111548 (25 bp)
ATTCCTTTCATCATCTAGTATCCAA
LOC_Os05g43320
Target Sequence 
AAAGGGAAAGGTGCTCTCCAGAGCACCGACCAGGTGTTGCCGTTCTCCACATCACGCAACAACGGCAAGGAGGGAAAAGC
TCGCAAGAGAGTGGAGGAGGCTCTCCCCCCATATCATATCTATCTTGAATGGATACCACCTTGTCCGACCAACCCAGAAT
ATCCTTCGTACGACACAAAAGCTCCTCGAAGAGAGTTGAAAGCAATTAACCTGGGAACCATCCTTGCAACTGCAGGTGTA
CCATTCCTTTCATCATCTAGTATCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis