Browse Element(s) Details


Os.7504.1.S2_x_at

Description gb:AK101520.1
DB_XREF= gi:32986729
TID=Os.7504.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7504 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046K22, full insert sequence.
FL= gb:AK101520.1 gb:AK063235.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4328011/11MATH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43230OsAffx.15081.1.S1_at10/115+25070837..25074449papain-like cysteine peptidase XBCP3, putative, expressed
LOC_Os05g43240Os.25185.1.S1_at11/115+25075780..25080241Jacalin-like lectin domain containing protein, expressed
LOC_Os05g43252Os.420.1.S2_at11/115+25081106..25086087expressed protein
LOC_Os05g43252Os.420.1.S1_at11/115+25081106..25086087expressed protein
LOC_Os05g43264NANA5+25092528..25093185NA
LOC_Os05g43280Os.7504.2.S1_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S2_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280OsAffx.15082.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43290OsAffx.15083.1.S1_at11/115+25103589..25104529hypothetical protein
LOC_Os05g43300Os.15545.1.S1_at11/115+25105050..25109889H1flk, putative, expressed
LOC_Os05g43310Os.5215.1.S1_at11/115+25110262..25111505Photosystem II reaction centre W protein containing protein, expressed
LOC_Os05g43320OsAffx.27290.1.S1_at11/115+25111479..25113208hypothetical protein
LOC_Os05g43330Os.29067.2.S1_at3/115+25117442..25117980hypothetical protein
LOC_Os05g43340OsAffx.22171.1.S1_at1/115+25121226..25124129retrotransposon protein, putative, unclassified
LOC_Os05g43350NANA5+25125622..25130445retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7504.1.S2_x_at--1074--71Chr05:25100995..25101019 (25 bp)
ATTCCCTCGAGTTCTACTGGTGGTT
LOC_Os05g43280
Os.7504.1.S2_x_at--225--10811Chr05:25101027..25101051 (25 bp)
TTGTAGTTCTAGTTGCGGCACATCT
LOC_Os05g43280
Os.7504.1.S2_x_at--974--5711Chr05:25101057..25101081 (25 bp)
GTTGGACCAAGATACCGTTCTACTC
LOC_Os05g43280
Os.7504.1.S2_x_at--645--9951Chr05:25101069..25101093 (25 bp)
TACCGTTCTACTCACCTTGAAGGAT
LOC_Os05g43280
Os.7504.1.S2_x_at--1025--8371Chr05:25101503..25101527 (25 bp)
GGCGAAAACTTCTCCAAGCTCATTT
LOC_Os05g43280
Os.7504.1.S2_x_at--934--2331Chr05:25101543..25101567 (25 bp)
AAAGACGAGTGGTTCATCTCCCTCA
LOC_Os05g43280
Os.7504.1.S2_x_at--4--7271Chr05:25101572..25101596 (25 bp)
GTCCTTTGGATGAAACACCTGATGT
LOC_Os05g43280
Os.7504.1.S2_x_at--712--10831Chr05:25101596..25101620 (25 bp)
TTGTGAAGAGCCCTGAGCAGTCTGC
LOC_Os05g43280
Os.7504.1.S2_x_at--123--5451Chr05:25101667..25101691 (25 bp)
GAACCCGTGACAAATTGCGTGGCAG
LOC_Os05g43280
Os.7504.1.S2_x_at--108--491Chr05:25101696..25101720 (25 bp)
ATCTGTTTCAGTCATGCCAGGCACA
LOC_Os05g43280
Os.7504.1.S2_x_at--221--8991Chr05:25101729..25101753 (25 bp)
TGAAGCTTTATCTGGCATGGCCCTT
LOC_Os05g43280
Target Sequence 
ATTCCCTCGAGTTCTACTGGTGGTTCGGCTCGTTGTAGTTCTAGTTGCGGCACATCTGCAAAGTTGGACCAAGATACCGT
TCTACTCACCTTGAAGGATAAACTCCGTAAGCTGGGGCAACGTCTACATGAGAAAAATATGGAGGGGCGAAAACTTCTCC
AAGCTCATTTTGAAGCCATGGAAGCAAAGACGAGTGGTTCATCTCCCTCATCCAGTCCTTTGGATGAAACACCTGATGTT
GTGAAGAGCCCTGAGCAGTCTGCAGAAGGTACAACAGATGCAAAAGCTAATGGAACACCAAATAAGGATGAACCCGTGAC
AAATTGCGTGGCAGAGGAATCTGTTTCAGTCATGCCAGGCACAAAGAGTACTGAAGCTTTATCTGGCATGGCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7504.1.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis