Browse Element(s) Details


Os.420.1.S1_at

Description gb:AB053294.1
DB_XREF= gi:12082334
GEN=RTRXH2
TID=Os.420.1
CNT=53
FEA=FLmRNA
TIER=FL+Stack
STK=20
UG=Os.420 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) RTRXH2 mRNA for thioredoxin h, complete cds.
PROD=thioredoxin h
FL= gb:AK059385.1 gb:AK106758.1 gb:AB053294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4325211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43230OsAffx.15081.1.S1_at10/115+25070837..25074449papain-like cysteine peptidase XBCP3, putative, expressed
LOC_Os05g43240Os.25185.1.S1_at11/115+25075780..25080241Jacalin-like lectin domain containing protein, expressed
LOC_Os05g43252Os.420.1.S2_at11/115+25081106..25086087expressed protein
LOC_Os05g43252Os.420.1.S1_at11/115+25081106..25086087expressed protein
LOC_Os05g43264NANA5+25092528..25093185NA
LOC_Os05g43280Os.7504.2.S1_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S2_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280OsAffx.15082.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43290OsAffx.15083.1.S1_at11/115+25103589..25104529hypothetical protein
LOC_Os05g43300Os.15545.1.S1_at11/115+25105050..25109889H1flk, putative, expressed
LOC_Os05g43310Os.5215.1.S1_at11/115+25110262..25111505Photosystem II reaction centre W protein containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.420.1.S1_at--753--6131Chr05:25081304..25081328 (25 bp)
GAGGGAACGGTGATCGCGATCCACA
LOC_Os05g43252
Os.420.1.S1_at--619--5691Chr05:25082499..25082523 (25 bp)
GACTTCACTGCATCATGGTGCGGAC
LOC_Os05g43252
Os.420.1.S1_at--272--71Chr05:25082535..25082559 (25 bp)
ATTGCTCCAGTTTTTGCCGATCTAG
LOC_Os05g43252
Os.420.1.S1_at--956--5111Chr05:25082567..25082591 (25 bp)
GCACACAAATGCTGTTTTTCTGAAG
LOC_Os05g43252
Os.420.1.S1_at--388--6211Chr05:25082747..25082771 (25 bp)
GAGGCTATGCCAACATTCCTGTTTA
LOC_Os05g43252
Os.420.1.S1_at--255--2571Chr05:25082820..25082844 (25 bp)
AACTGGCGAGCAAGCTTGAGCTACA
LOC_Os05g43252
Os.420.1.S1_at--498--11Chr05:25082890..25082914 (25 bp)
AAAACGGGCCTTCAGGCTCTGAAAG
LOC_Os05g43252
Os.420.1.S1_at--230--2911Chr05:25082912..25082936 (25 bp)
AAGGATTAGTGCCTCTGTCTGTGGT
LOC_Os05g43252
Os.420.1.S1_at--80--7191Chr05:25082928..25082952 (25 bp)
GTCTGTGGTGGTTTTCATATGCTTC
LOC_Os05g43252
Os.420.1.S1_at--379--1551Chr05:25082961..25082985 (25 bp)
AGCATTGTTCTTACCGTTGTCTAGT
LOC_Os05g43252
Os.420.1.S1_at--937--6451Chr05:25082991..25083015 (25 bp)
GATAATGCCTTGCTTGATCCAAGTT
LOC_Os05g43252
Target Sequence 
GAGGGAACGGTGATCGCGATCCACAGCCTCGACGAGTGGACCATCCAGATCGAGGAGGCCAACAGCGCCAAGAAGCTGGT
TGTGATTGACTTCACTGCATCATGGTGCGGACCATGCCGCATCATTGCTCCAGTTTTTGCCGATCTAGCAAAGAAGCACA
CAAATGCTGTTTTTCTGAAGGTTGACGTCGATGAACTGAAGCCTATTGCTGAGCAATTCAGTGTTGAGGCTATGCCAACA
TTCCTGTTTATGAAGGAGGGAGATGTTAAAGACAGGGTTGTCGGTGCTATGAAGGATGAACTGGCGAGCAAGCTTGAGCT
ACATATGGCCATGTAGTGTTATAGTGGATTAGTACTGATATCCTAAATAAAACGGGCCTTCAGGCTCTGAAAGGATTAGT
GCCTCTGTCTGTGGTGGTTTTCATATGCTTCTAGTATCAAGCATTGTTCTTACCGTTGTCTAGTTCATGGATAATGCCTT
GCTTGATCCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis