Browse Element(s) Details


Os.5215.1.S1_at

Description gb:AK066345.1
DB_XREF= gi:32976363
TID=Os.5215.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013064H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013064H24, full insert sequence.
FL= gb:AK066345.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4331011/11Photosystem II reaction centre W protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43252Os.420.1.S2_at11/115+25081106..25086087expressed protein
LOC_Os05g43252Os.420.1.S1_at11/115+25081106..25086087expressed protein
LOC_Os05g43264NANA5+25092528..25093185NA
LOC_Os05g43280Os.7504.2.S1_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S2_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280OsAffx.15082.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43290OsAffx.15083.1.S1_at11/115+25103589..25104529hypothetical protein
LOC_Os05g43300Os.15545.1.S1_at11/115+25105050..25109889H1flk, putative, expressed
LOC_Os05g43310Os.5215.1.S1_at11/115+25110262..25111505Photosystem II reaction centre W protein containing protein, expressed
LOC_Os05g43320OsAffx.27290.1.S1_at11/115+25111479..25113208hypothetical protein
LOC_Os05g43330Os.29067.2.S1_at3/115+25117442..25117980hypothetical protein
LOC_Os05g43340OsAffx.22171.1.S1_at1/115+25121226..25124129retrotransposon protein, putative, unclassified
LOC_Os05g43350NANA5+25125622..25130445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g43360Os.11069.1.S1_at11/115+25131326..25134653NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os05g43370Os.49125.1.S1_s_at6/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43370Os.6027.1.A1_at1/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed
LOC_Os05g43370OsAffx.15220.3.S1_at1/115+25135532..25141061tRNA pseudouridine synthase D family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5215.1.S1_at--1112--8871Chr05:25110792..25110816 (25 bp)
TGAGGTGCGGCTACTCCTCCAGGGA
LOC_Os05g43310
Os.5215.1.S1_at--1038--3971Chr05:25110844..25110868 (25 bp)
CGTGAAAGGCGCGACGTCGATGCTC
LOC_Os05g43310
Os.5215.1.S1_at--581--2211Chr05:25111159..25111183 (25 bp)
AAATAAATCCTCTCTAAATCCTCCG
LOC_Os05g43310
Os.5215.1.S1_at--169--9911Chr05:25111193..25111217 (25 bp)
TACTCGACACGAGGCGGCAGTTAAT
LOC_Os05g43310
Os.5215.1.S1_at--787--9751Chr05:25111240..25111264 (25 bp)
TAGAGACCAATTGAAGTTACCACTT
LOC_Os05g43310
Os.5215.1.S1_at--981--5311Chr05:25111252..25111276 (25 bp)
GAAGTTACCACTTCGATGAGTCCGT
LOC_Os05g43310
Os.5215.1.S1_at--194--9391Chr05:25111264..25111288 (25 bp)
TCGATGAGTCCGTCTACTGATCCTG
LOC_Os05g43310
Os.5215.1.S1_at--105--9931Chr05:25111278..25111302 (25 bp)
TACTGATCCTGCCTCTATCTTTTTT
LOC_Os05g43310
Os.5215.1.S1_at--1094--10311Chr05:25111306..25111330 (25 bp)
TTTTACTGTTCTGCAAATAGGCGGG
LOC_Os05g43310
Os.5215.1.S1_at--384--4311Chr05:25111336..25111360 (25 bp)
CCTATGCTTGAGTGTGCATGTCGAA
LOC_Os05g43310
Os.5215.1.S1_at--733--8051Chr05:25111377..25111401 (25 bp)
GGAGACGTGCATGGATATTTTGTAA
LOC_Os05g43310
Target Sequence 
TGAGGTGCGGCTACTCCTCCAGGGACGGCAAGGAGGCGACGCCCGCCGCCGCCGTGAAAGGCGCGACGTCGATGCTCGCG
GCGGCGGTGACGGCGTCGTCGTCGTCGGCGCCGGCGGCGATGGCGCTGGTGGATCCTCCTCGGCGTGTTCGGCCTCATCT
GGTCGCTCTACACCGTCTACACCTCCACGCTCGACGACGACGACGAGTCCGGCGGCCTCTCCCTCTGAGGCCTTGTTCGG
TTAATCCGAGAAAGAGATTGGAGAGGGGATTGAGAGAATAATTCTACACTATAATAGGAGTAAAATAAATCCTCTCTAAA
TCCTCCGCTCGCGCGTTACTCGACACGAGGCGGCAGTTAATTATTTTGCATTCTTAGTTGGTGTAGAGACCAATTGAAGT
TACCACTTCGATGAGTCCGTCTACTGATCCTGCCTCTATCTTTTTTTTTTTTTACTGTTCTGCAAATAGGCGGGGCCTGC
CTATGCTTGAGTGTGCATGTCGAATTTGGTGTAATTAATTGGAGACGTGCATGGATATTTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis