Browse Element(s) Details


Os.6027.1.A1_at

Description gb:CA759735
DB_XREF= gi:25803774
DB_XREF=BR060014A20B12.ab1
CLONE=BR060014A20B12.ab1
TID=Os.6027.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6027 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_567912.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3761011/11Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os05g433701/11tRNA pseudouridine synthase D family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37560Os.6322.1.S1_at11/116+22244389..22250775Beta-galactosidase precursor, putative, expressed
LOC_Os06g37570Os.54616.1.S1_at11/116+22253357..22254986expressed protein
LOC_Os06g37580OsAffx.27978.1.S1_at11/116+22255656..22256036hypothetical protein
LOC_Os06g37590OsAffx.15801.1.S1_at11/116+22257064..22258164oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g37600OsAffx.27979.1.S1_x_at11/116+22259998..22261041expressed protein
LOC_Os06g37600OsAffx.27979.1.S1_at11/116+22259998..22261041expressed protein
LOC_Os06g37610Os.6027.1.A1_at11/116+22265803..22270123Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os06g37620OsAffx.27980.1.S1_at11/116+22270192..22274419U-box domain containing protein, expressed
LOC_Os06g37630OsAffx.15802.1.S1_at1/116+22279908..22285497transposon protein, putative, Mariner sub-class
LOC_Os06g37640OsAffx.15802.1.S1_at11/116+22291249..22300033expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008610biological_processlipid biosynthesis
GO:0008825molecular_functioncyclopropane-fatty-acyl-phospholipid synthase activity
GO:0030794molecular_function(S)-coclaurine-N-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6027.1.A1_at--78--4171Chr06:22269524..22269548 (25 bp)
CGCCGAGCTTTTTGGATACAACAAT
LOC_Os06g37610
Os.6027.1.A1_at--306--6691Chr06:22269564..22269588 (25 bp)
GTTGCGCATTTCTTGTTCCGGAAGA
LOC_Os06g37610
Os.6027.1.A1_at--612--1431Chr06:22269586..22269610 (25 bp)
AGAAGTAGAAGTCACCCCTGGAGCC
LOC_Os06g37610
Os.6027.1.A1_at--546--8232Chr10:20710970..20711006 (24 bp)
GGCAACCTTCTGTTCAGATTCGTTG
NONE
Os.6027.1.A1_at--972--5391Chr06:22269767..22269791 (25 bp)
GAAGCATTCAATCCCTTTTCAGACC
LOC_Os06g37610
Os.6027.1.A1_at--876--931Chr06:22269806..22269830 (25 bp)
AGGAATCGTGCTTTGCATGACCTCT
LOC_Os06g37610
Os.6027.1.A1_at--224--3691Chr06:22269877..22269901 (25 bp)
CTTTGCTGTGTTGTTTCGTTTCCAA
LOC_Os06g37610
Os.6027.1.A1_at--1133--9812Chr06:22269902..22269926 (25 bp)
TAAACTGTAGTTCTTTTCCTTCATT
LOC_Os06g37610
Os.6027.1.A1_at--210--6551Chr06:22269989..22270013 (25 bp)
GATTTTGTCAGATCGTGCCGACACC
LOC_Os06g37610
Os.6027.1.A1_at--696--5631Chr06:22270008..22270032 (25 bp)
GACACCTTGGACACTGACTACTTCA
LOC_Os06g37610
Os.6027.1.A1_at--471--8751Chr06:22270063..22270087 (25 bp)
TGTACCCCTACGAACATTTCATTTT
LOC_Os06g37610
Target Sequence 
CGCCGAGCTTTTTGGATACAACAATGGCGATGAGTGGATGGTTGCGCATTTCTTGTTCCGGAAGAAGTAGAAGTCACCCC
TGGAGCCAAGTACTCCCTCCATCCCATAAAAAACCAACNTGGTATTGGAGGTGATATTCCCTAGTATAACGAATNTAGGC
AACCTTCTGTTCAGATTCGTTGTATTAGGAAATATCNCCTCCAATAGTAGGTTGATTTTTTGTGGGACGAAGGGAGTAAT
TCAGAAGCATTCAATCCCTTTTCAGACCTCACTTGATGATTCAGGAATCGTGCTTTGCATGACCTCTATGAACATTTTCA
TTTTTATTGCGTTAAATTGCAAGTAGTGAGATGCTTTGCTGTGTTGTTTCGTTTCCAATAAACTGTAGTTCTTTTCCTTC
ATTTTTTTTTGTCAATGTTGATGGTTTTCCTGAGTGAACAAGGATATAGATCGTTGTGATTTACGGATTTTGTCAGATCG
TGCCGACACCTTGGACACTGACTACTTCANGGTTACAGCNAGAGAATNTTTGCTTTCCATGTACCCCTACGAACATTTCA
TTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6027.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis