Browse Element(s) Details


Os.6322.1.S1_at

Description gb:AK105619.1
DB_XREF= gi:32990828
TID=Os.6322.1
CNT=55
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.6322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C02, full insert sequence.
FL= gb:AK102756.1 gb:AK105619.1 gb:AK059741.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3756011/11Beta-galactosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37540OsAffx.27977.1.S1_at11/116+22222464..22222768hypothetical protein
LOC_Os06g37550OsAffx.15800.1.S1_at9/116+22235414..22238578hypothetical protein
LOC_Os06g37560Os.6322.1.S1_at11/116+22244389..22250775Beta-galactosidase precursor, putative, expressed
LOC_Os06g37570Os.54616.1.S1_at11/116+22253357..22254986expressed protein
LOC_Os06g37580OsAffx.27978.1.S1_at11/116+22255656..22256036hypothetical protein
LOC_Os06g37590OsAffx.15801.1.S1_at11/116+22257064..22258164oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g37600OsAffx.27979.1.S1_x_at11/116+22259998..22261041expressed protein
LOC_Os06g37600OsAffx.27979.1.S1_at11/116+22259998..22261041expressed protein
LOC_Os06g37610Os.6027.1.A1_at11/116+22265803..22270123Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os06g37620OsAffx.27980.1.S1_at11/116+22270192..22274419U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6322.1.S1_at--844--3831Chr06:22250139..22250163 (25 bp)
CTGCTGGAAGAGTTCGGCGGCGACT
LOC_Os06g37560
Os.6322.1.S1_at--253--291Chr06:22250316..22250340 (25 bp)
ATACGGCGTAGATACGGATACGGCT
LOC_Os06g37560
Os.6322.1.S1_at--225--6471Chr06:22250332..22250356 (25 bp)
GATACGGCTGGGTATACGTACATAC
LOC_Os06g37560
Os.6322.1.S1_at--34--8791Chr06:22250384..22250408 (25 bp)
TGTTATTTATTGATGGCTGCCGCGC
LOC_Os06g37560
Os.6322.1.S1_at--435--951Chr06:22250436..22250460 (25 bp)
AGGAACTGCGGCTCCGGTCACGGCT
LOC_Os06g37560
Os.6322.1.S1_at--294--6991Chr06:22250474..22250498 (25 bp)
GTACGGTCGCCGTCGATTATTTATT
LOC_Os06g37560
Os.6322.1.S1_at--465--3711Chr06:22250505..22250529 (25 bp)
CTAGTTATTTATTCTGAGCCGTGGA
LOC_Os06g37560
Os.6322.1.S1_at--887--4491Chr06:22250522..22250546 (25 bp)
GCCGTGGATGATGGCTTTGAGATCA
LOC_Os06g37560
Os.6322.1.S1_at--196--8311Chr06:22250534..22250558 (25 bp)
GGCTTTGAGATCAGTGCACAGGTGC
LOC_Os06g37560
Os.6322.1.S1_at--1046--631Chr06:22250612..22250636 (25 bp)
ATGAGAAAATTTGCAACGTTGAGTT
LOC_Os06g37560
Os.6322.1.S1_at--930--7031Chr06:22250637..22250661 (25 bp)
GTAAATGGGAACAGCACTTAGAATT
LOC_Os06g37560
Target Sequence 
CTGCTGGAAGAGTTCGGCGGCGACTTGTCCGGGGTCACGTTGATGACGAGGACGACATGAACAGGAGGAAGAATTGAAGT
GGAGATGATTTGAATTGTGGATAATTTANCAGGGGGAATTGCAGAATTGGGGATTTGGGAGCGAAGGAAAGTGGGGGCGT
ATAGCNATTATCTATACATACGGCGTAGATACGGATACGGCTGGGTATACGTACATACGTATACGTATATGAACTGGTAG
AGTACTGTTATTTATTGATGGCTGCCGCGCTGGCCGGCCGTACGCCGGAGCGGCTGCAGGAACTGCGGCTCCGGTCACGG
CTGCCGGCGGCCGGTGTACGGTCGCCGTCGATTATTTATTATTTTACTAGTTATTTATTCTGAGCCGTGGATGATGGCTT
TGAGATCAGTGCACAGGTGCTTGGAGCCTTGGATCGCTTTACTCTCTCTCTCTCTCNNNNCAATTTTCTTCAGTTCTATG
AGAAAATTTGCAACGTTGAGTTGTAAATGGGAACAGCACTTAGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis