Browse Element(s) Details


OsAffx.15801.1.S1_at

Description tigr:9634.m03585
TID=OsAffx.15801.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, 2OG-Fe(II) oxygenase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3759011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37550OsAffx.15800.1.S1_at9/116+22235414..22238578hypothetical protein
LOC_Os06g37560Os.6322.1.S1_at11/116+22244389..22250775Beta-galactosidase precursor, putative, expressed
LOC_Os06g37570Os.54616.1.S1_at11/116+22253357..22254986expressed protein
LOC_Os06g37580OsAffx.27978.1.S1_at11/116+22255656..22256036hypothetical protein
LOC_Os06g37590OsAffx.15801.1.S1_at11/116+22257064..22258164oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g37600OsAffx.27979.1.S1_x_at11/116+22259998..22261041expressed protein
LOC_Os06g37600OsAffx.27979.1.S1_at11/116+22259998..22261041expressed protein
LOC_Os06g37610Os.6027.1.A1_at11/116+22265803..22270123Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os06g37620OsAffx.27980.1.S1_at11/116+22270192..22274419U-box domain containing protein, expressed
LOC_Os06g37630OsAffx.15802.1.S1_at1/116+22279908..22285497transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009693biological_processethylene biosynthesis
GO:0009727biological_processdetection of ethylene stimulus
GO:0009815molecular_function1-aminocyclopropane-1-carboxylate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15801.1.S1_at--915--711Chr06:22257766..22257787 (22 bp)
ATGATATTCCTGAGCTGGTCCGTAC
LOC_Os06g37590
OsAffx.15801.1.S1_at--952--6971Chr06:22257605..22257629 (25 bp)
GTACCACTCTTCCTGAATATGCTGA
LOC_Os06g37590
OsAffx.15801.1.S1_at--990--6571Chr06:22257499..22257523 (25 bp)
GTTTTCTAATCCTTCCGTAGGCATA
LOC_Os06g37590
OsAffx.15801.1.S1_at--684--8451Chr06:22257469..22257493 (25 bp)
GGCCAAGTACCCTAGGTGCAGTCAT
LOC_Os06g37590
OsAffx.15801.1.S1_at--625--7611Chr06:22257403..22257427 (25 bp)
GGGAATCATACTTCTACTCCAAGAT
LOC_Os06g37590
OsAffx.15801.1.S1_at--32--7991Chr06:22257338..22257362 (25 bp)
GGATGCCAATACCACCAACACAAGG
LOC_Os06g37590
OsAffx.15801.1.S1_at--906--4891Chr06:22257251..22257275 (25 bp)
GCATTTGCCATCAGGTAGTACCCAA
LOC_Os06g37590
OsAffx.15801.1.S1_at--157--4451Chr06:22257212..22257236 (25 bp)
GCCTATCTATCGCAACATTCTACAA
LOC_Os06g37590
OsAffx.15801.1.S1_at--996--1031Chr06:22257184..22257208 (25 bp)
AGGTCCTGATGCTATAGTCTTCCCA
LOC_Os06g37590
OsAffx.15801.1.S1_at--752--711Chr06:22257169..22257193 (25 bp)
AGTCTTCCCAGCTCAAAAGCTTACG
LOC_Os06g37590
OsAffx.15801.1.S1_at--784--1391Chr06:22257121..22257145 (25 bp)
AGACTACCTCGAATTTTACTCCACT
LOC_Os06g37590
Target Sequence 
ATGATATTCCTGAGCTGGTCCGTACCACTCTTCCTGAATATGCTGAAGAAGTAATCAAGTTGGCAGAGCGGCTAGCAGAA
GTTATGAGTGAGAACCTTGGGCTTGACAAGGATTACTTGAAGAAAGCGTTTTCTAATCCTTCCGTAGGCATAAAGGCGGC
CAAGTACCCTAGGTGCAGTCATCCCGAATTTGTGATGGGGCTCCGCGGACACACTGACGCTGGGGGAATCATACTTCTAC
TCCAAGATGACTTGGTCCCTGGTTTGGAGTTCTTGAAAGATGGTAGATGGATGCCAATACCACCAACACAAGGCAATCAA
ATTTTCGTAAACCTTGGAGATCAGGTTGAAGTGATAAGCAATGGAATATATAAGAGCATTTGCCATCAGGTAGTACCCAA
TAAGAACGGGAGCCGCCTATCTATCGCAACATTCTACAACCCAGGTCCTGATGCTATAGTCTTCCCAGCTCAAAAGCTTA
CGTATCCTAGTCAATACCGTTTCAAAGACTACCTCGAATTTTACTCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis