Browse Element(s) Details


OsAffx.15800.1.S1_at

Description tigr:9634.m03581
TID=OsAffx.15800.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g375509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37530OsAffx.15799.1.S1_at11/116+22214824..22216864hypothetical protein
LOC_Os06g37530Os.29966.2.S1_x_at1/116+22214824..22216864hypothetical protein
LOC_Os06g37530Os.29966.1.S1_x_at1/116+22214824..22216864hypothetical protein
LOC_Os06g37530Os.29966.1.S1_at1/116+22214824..22216864hypothetical protein
LOC_Os06g37540OsAffx.27977.1.S1_at11/116+22222464..22222768hypothetical protein
LOC_Os06g37550OsAffx.15800.1.S1_at9/116+22235414..22238578hypothetical protein
LOC_Os06g37560Os.6322.1.S1_at11/116+22244389..22250775Beta-galactosidase precursor, putative, expressed
LOC_Os06g37570Os.54616.1.S1_at11/116+22253357..22254986expressed protein
LOC_Os06g37580OsAffx.27978.1.S1_at11/116+22255656..22256036hypothetical protein
LOC_Os06g37590OsAffx.15801.1.S1_at11/116+22257064..22258164oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g37600OsAffx.27979.1.S1_x_at11/116+22259998..22261041expressed protein
LOC_Os06g37600OsAffx.27979.1.S1_at11/116+22259998..22261041expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15800.1.S1_at--110--2291Chr06:22235445..22235469 (25 bp)
AAATGCCGGATGAAGGAAGCGCTCA
LOC_Os06g37550
OsAffx.15800.1.S1_at--77--951NONE
AGGAAGCGCTCATCTTGAAAGCAAT
NONE
OsAffx.15800.1.S1_at--254--3011Chr06:22235528..22235551 (24 bp)
AATGCTAACATGTTGTCAGTATGCA
LOC_Os06g37550
OsAffx.15800.1.S1_at--1117--651NONE
ATGCAACTGCATGTTATGGTTTGAA
NONE
OsAffx.15800.1.S1_at--655--7671Chr06:22236940..22236964 (25 bp)
GGGATTGTCTTGGTCCATTTGCTAT
LOC_Os06g37550
OsAffx.15800.1.S1_at--725--2971Chr06:22237792..22237814 (23 bp)
AATGGTGTCAAGACTCGACCAAGAG
LOC_Os06g37550
OsAffx.15800.1.S1_at--1061--2771Chr06:22238203..22238226 (24 bp)
AAGAGCAAACTCTGGCCATCAGAAA
LOC_Os06g37550
OsAffx.15800.1.S1_at--649--2331Chr06:22238224..22238248 (25 bp)
AAAGATGATGGATCGCACTCTCAAC
LOC_Os06g37550
OsAffx.15800.1.S1_at--462--7971Chr06:22238233..22238257 (25 bp)
GGATCGCACTCTCAACCAGGTTGAT
LOC_Os06g37550
OsAffx.15800.1.S1_at--993--9791Chr06:22238262..22238284 (23 bp)
TAACGCTTCTTTTTAGAGGCTTGAA
LOC_Os06g37550
OsAffx.15800.1.S1_at--189--10731Chr06:22238517..22238541 (25 bp)
TTGAGAGGCAGTACACCCAAAGGTG
LOC_Os06g37550
Target Sequence 
AAATGCCGGATGAAGGAAGCGCTCATCTTGAAAGCAATGCTAACATGTTGTCAGTATGCAACTGCATGTTATGGTTTGAA
GTGATGATAAATGAGATTGAAGGGGATTGTCTTGGTCCATTTGCTATAATTCTAATTAAATATGCTAGTGACAAGTTTGA
GATCATTGCGATAAGTTATCTTGATCAGTGCATAACTATGGATGAGAAAGATATATGGCCAAAGGGAGGGTATGATTCAA
TTATTGACTTGAAAATGGTGTCAAGACTCGACCAAGAGCAAACTCTGGCCATCAGAAAGATGATGGATCGCACTCTCAAC
CAGGTTGATGAATTAACGCTTCTTTTTAGAGGCTTGAACTACAGAAGGATTAGTATTGTTGAGAGGCAGTACACCCAAAG
GTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis