Browse Element(s) Details


OsAffx.15799.1.S1_at

Description tigr:9634.m03579
TID=OsAffx.15799.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3753011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37500OsAffx.15797.1.S1_at11/116+22191036..22193966Cytokinin dehydrogenase 1 precursor, putative
LOC_Os06g37510Os.47945.1.A1_at11/116+22196412..22199011senescence-associated protein, putative, expressed
LOC_Os06g37520OsAffx.15798.1.S1_at11/116+22208187..22208927Zinc knuckle family protein
LOC_Os06g37530OsAffx.15799.1.S1_at11/116+22214824..22216864hypothetical protein
LOC_Os06g37530Os.29966.2.S1_x_at1/116+22214824..22216864hypothetical protein
LOC_Os06g37530Os.29966.1.S1_x_at1/116+22214824..22216864hypothetical protein
LOC_Os06g37530Os.29966.1.S1_at1/116+22214824..22216864hypothetical protein
LOC_Os06g37540OsAffx.27977.1.S1_at11/116+22222464..22222768hypothetical protein
LOC_Os06g37550OsAffx.15800.1.S1_at9/116+22235414..22238578hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15799.1.S1_at--115--8491Chr06:22215314..22215338 (25 bp)
TGGCTAGAGCACATGGGAGAACGAA
LOC_Os06g37530
OsAffx.15799.1.S1_at--252--8551Chr06:22215278..22215302 (25 bp)
TGGAGGGCTGGTTGCCCGTTTCCTC
LOC_Os06g37530
OsAffx.15799.1.S1_at--236--2971Chr06:22215172..22215196 (25 bp)
AATGGCAGTCGCCATTGGCTGCCGC
LOC_Os06g37530
OsAffx.15799.1.S1_at--1073--8111Chr06:22215083..22215107 (25 bp)
GGACTAGCTCTAAGTCATGGCTCCT
LOC_Os06g37530
OsAffx.15799.1.S1_at--1039--3491Chr06:22215068..22215092 (25 bp)
CATGGCTCCTCAGGGCGATGACGTC
LOC_Os06g37530
OsAffx.15799.1.S1_at--363--4051Chr06:22215053..22215077 (25 bp)
CGATGACGTCCCATGTGAGGTCGGT
LOC_Os06g37530
OsAffx.15799.1.S1_at--135--8891Chr06:22215038..22215062 (25 bp)
TGAGGTCGGTGGTCCCCAGTGTCCT
LOC_Os06g37530
OsAffx.15799.1.S1_at--336--4351Chr06:22215023..22215047 (25 bp)
CCAGTGTCCTCAATGGAGCGTCGAC
LOC_Os06g37530
OsAffx.15799.1.S1_at--312--5891Chr06:22215008..22215032 (25 bp)
GAGCGTCGACAAAGGCAAACACTGG
LOC_Os06g37530
OsAffx.15799.1.S1_at--499--1251Chr06:22214949..22214973 (25 bp)
AGATTGTGGACAAGCTTCGCCACCG
LOC_Os06g37530
OsAffx.15799.1.S1_at--538--6631Chr06:22214904..22214928 (25 bp)
GTTGTGCCGTGCGTCTCCTATCTTC
LOC_Os06g37530
Target Sequence 
TGGCTAGAGCACATGGGAGAACGAAGGGAGAGCATGTGGAGGGCTGGTTGCCCGTTTCCTCGTCGTTCGCCGCGAGGCGC
TGGCTGCTGATGGAGGGCGGCGGGGCGTCAGGAGTGGAGCTAGGCGGCGGTGGCCAACGAGAAATGGCAGTCGCCATTGG
CTGCCGCGGAGGTGAAGGCATGCGCCGTGGCGGTGGCTCGCCACTCACGGACGACGCTGGTGGTGAGGGCAGGACTAGCT
CTAAGTCATGGCTCCTCAGGGCGATGACGTCCCATGTGAGGTCGGTGGTCCCCAGTGTCCTCAATGGAGCGTCGACAAAG
GCAAACACTGGGAAGAGGAAGACAAGAGATGGGAGGGGACGCGCAAGATTGTGGACAAGCTTCGCCACCGCTCTCCCCTA
CCGGGCACCGGTTGTGCCGTGCGTCTCCTATCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis