Browse Element(s) Details


Os.47945.1.A1_at

Description gb:AK070273.1
DB_XREF= gi:32980297
TID=Os.47945.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47945 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023046E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023046E08, full insert sequence.
FL= gb:AK070273.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3751011/11senescence-associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37490NANA6+22182479..22182724hypothetical protein
LOC_Os06g37500OsAffx.15797.1.S1_at11/116+22191036..22193966Cytokinin dehydrogenase 1 precursor, putative
LOC_Os06g37510Os.47945.1.A1_at11/116+22196412..22199011senescence-associated protein, putative, expressed
LOC_Os06g37520OsAffx.15798.1.S1_at11/116+22208187..22208927Zinc knuckle family protein
LOC_Os06g37530OsAffx.15799.1.S1_at11/116+22214824..22216864hypothetical protein
LOC_Os06g37530Os.29966.2.S1_x_at1/116+22214824..22216864hypothetical protein
LOC_Os06g37530Os.29966.1.S1_x_at1/116+22214824..22216864hypothetical protein
LOC_Os06g37530Os.29966.1.S1_at1/116+22214824..22216864hypothetical protein
LOC_Os06g37540OsAffx.27977.1.S1_at11/116+22222464..22222768hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47945.1.A1_at--262--9491Chr06:22196906..22196930 (25 bp)
TCTGCTACGAGTGCAGCTCCTGCAA
LOC_Os06g37510
Os.47945.1.A1_at--779--7111Chr06:22196793..22196817 (25 bp)
GTCATCGGCTGCAGCGCCTTCAAGA
LOC_Os06g37510
Os.47945.1.A1_at--974--9711Chr06:22196774..22196798 (25 bp)
TCAAGAACGCGCAGACCGAGGACCT
LOC_Os06g37510
Os.47945.1.A1_at--439--2231Chr06:22196738..22196762 (25 bp)
ACAAGTGGCGCAACTGATCGGCGCT
LOC_Os06g37510
Os.47945.1.A1_at--998--7751Chr06:22196684..22196708 (25 bp)
GGTGCCGGTTTGCTTAACTTCTTGC
LOC_Os06g37510
Os.47945.1.A1_at--509--9591Chr06:22196659..22196683 (25 bp)
TCTTGGCTCTTGCTACATAGTATCA
LOC_Os06g37510
Os.47945.1.A1_at--792--6551Chr06:22196587..22196611 (25 bp)
GATTACTGGATGCTGCTAGTTTGTT
LOC_Os06g37510
Os.47945.1.A1_at--887--7371Chr06:22196551..22196575 (25 bp)
GTGAGTACAATCTACGGGCTGGTTT
LOC_Os06g37510
Os.47945.1.A1_at--592--2991Chr06:22196513..22196537 (25 bp)
AATGTATATATGTTGCCGGCTTGTG
LOC_Os06g37510
Os.47945.1.A1_at--835--7191Chr06:22196458..22196482 (25 bp)
GTCGTACCTACCGTCAGACTGAGTA
LOC_Os06g37510
Os.47945.1.A1_at--489--5731Chr06:22196442..22196466 (25 bp)
GACTGAGTACTCTTTTGCTGTATTA
LOC_Os06g37510
Target Sequence 
TCTGCTACGAGTGCAGCTCCTGCAAGGCCGGGATGCTGGNCACCCTNCGGGANCAGTGGCGCAGGNCCAACGTCGCCCTC
GTCATCGCCACCGTCGCGCTCATCTTCTTCTACGTCATCGGCTGCAGCGCCTTCAAGAACGCGCAGACCGAGGACCTCTT
CCGCCGCTACAAGTGGCGCAACTGATCGGCGCTGCTGTCTGATGATCAATCAGCTCCTCGCCGGTGCCGGTTTGCTTAAC
TTCTTGCTCTTGGCTCTTGCTACATAGTATCAGTATTATATCTGNTGATTAATTTTACAGTGCATTGTTCTGTTCTGAAG
ATTACTGGATGCTGCTAGTTTGTTTTGTTGATCTAGTGAGTACAATCTACGGGCTGGTTTCAAAGCTTAGCCAAATGTAT
ATATGTTGCCGGCTTGTGTTGTTGGCACGGGTTGTCAANTTTGTCATGGTCGTACCTACCGTCAGACTGAGTACTCTTTT
GCTGTATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47945.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis