CREP Browser

Description

tigr:9634.m03580
TID=OsAffx.27977.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g37540	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g37510	Os.47945.1.A1_at	11/11	6	+	22196412..22199011	senescence-associated protein, putative, expressed
LOC_Os06g37520	OsAffx.15798.1.S1_at	11/11	6	+	22208187..22208927	Zinc knuckle family protein
LOC_Os06g37530	OsAffx.15799.1.S1_at	11/11	6	+	22214824..22216864	hypothetical protein
LOC_Os06g37530	Os.29966.2.S1_x_at	1/11	6	+	22214824..22216864	hypothetical protein
LOC_Os06g37530	Os.29966.1.S1_x_at	1/11	6	+	22214824..22216864	hypothetical protein
LOC_Os06g37530	Os.29966.1.S1_at	1/11	6	+	22214824..22216864	hypothetical protein
LOC_Os06g37540	OsAffx.27977.1.S1_at	11/11	6	+	22222464..22222768	hypothetical protein
LOC_Os06g37550	OsAffx.15800.1.S1_at	9/11	6	+	22235414..22238578	hypothetical protein
LOC_Os06g37560	Os.6322.1.S1_at	11/11	6	+	22244389..22250775	Beta-galactosidase precursor, putative, expressed

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27977.1.S1_at--607--181	1	Chr06:22222625..22222649 (25 bp)	ACCCTCAGGTCCCTAGTGATCTTAA	LOC_Os06g37540
OsAffx.27977.1.S1_at--592--429	1	Chr06:22222623..22222647 (25 bp)	CCTCAGGTCCCTAGTGATCTTAATC	LOC_Os06g37540
OsAffx.27977.1.S1_at--186--963	1	Chr06:22222621..22222645 (25 bp)	TCAGGTCCCTAGTGATCTTAATCTC	LOC_Os06g37540
OsAffx.27977.1.S1_at--1037--813	1	Chr06:22222594..22222618 (25 bp)	GGAAAATCTGGTGCGAACAAAATAC	LOC_Os06g37540
OsAffx.27977.1.S1_at--877--777	1	Chr06:22222585..22222609 (25 bp)	GGTGCGAACAAAATACAAGAATCTT	LOC_Os06g37540
OsAffx.27977.1.S1_at--192--551	1	Chr06:22222580..22222604 (25 bp)	GAACAAAATACAAGAATCTTCCGCA	LOC_Os06g37540
OsAffx.27977.1.S1_at--716--47	1	Chr06:22222548..22222572 (25 bp)	ATCTGCGCTGTCCTCAATTCTAGTA	LOC_Os06g37540
OsAffx.27977.1.S1_at--784--381	1	Chr06:22222546..22222570 (25 bp)	CTGCGCTGTCCTCAATTCTAGTAAA	LOC_Os06g37540
OsAffx.27977.1.S1_at--695--457	1	Chr06:22222544..22222568 (25 bp)	GCGCTGTCCTCAATTCTAGTAAAGA	LOC_Os06g37540
OsAffx.27977.1.S1_at--291--473	1	Chr06:22222542..22222566 (25 bp)	GCTGTCCTCAATTCTAGTAAAGATC	LOC_Os06g37540
OsAffx.27977.1.S1_at--373--799	1	Chr06:22222515..22222539 (25 bp)	GGAGGAAGAAAGAGCATGGGCCAAA	LOC_Os06g37540

Target Sequence

ACCCTCAGGTCCCTAGTGATCTTAATCTCGTGGAAAATCTGGTGCGAACAAAATACAAGAATCTTCCGCAACAATGCATC
TGCGCTGTCCTCAATTCTAGTAAAGATCAAGGAGGAAGAAAGAGCATGGGCCAAA

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Browse Element(s) Details