Browse Element(s) Details


OsAffx.15797.1.S1_at

Description tigr:9634.m03575
TID=OsAffx.15797.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3750011/11Cytokinin dehydrogenase 1 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37470OsAffx.21171.4.S1_x_at1/116+22165651..22167987retrotransposon protein, putative, unclassified
LOC_Os06g37480NANA6+22168666..22170024retrotransposon protein, putative, unclassified
LOC_Os06g37490NANA6+22182479..22182724hypothetical protein
LOC_Os06g37500OsAffx.15797.1.S1_at11/116+22191036..22193966Cytokinin dehydrogenase 1 precursor, putative
LOC_Os06g37510Os.47945.1.A1_at11/116+22196412..22199011senescence-associated protein, putative, expressed
LOC_Os06g37520OsAffx.15798.1.S1_at11/116+22208187..22208927Zinc knuckle family protein
LOC_Os06g37530OsAffx.15799.1.S1_at11/116+22214824..22216864hypothetical protein
LOC_Os06g37530Os.29966.2.S1_x_at1/116+22214824..22216864hypothetical protein
LOC_Os06g37530Os.29966.1.S1_x_at1/116+22214824..22216864hypothetical protein
LOC_Os06g37530Os.29966.1.S1_at1/116+22214824..22216864hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0046420
GO:0009823biological_processcytokinin catabolism
GO:0005773cellular_componentvacuole
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0008131molecular_functionamine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15797.1.S1_at--404--7011Chr06:22192798..22192822 (25 bp)
GTACTATGACGATAACACCGCCGCT
LOC_Os06g37500
OsAffx.15797.1.S1_at--313--4511Chr06:22192385..22192803 (25 bp)
GCCGCTTCCGTGGATCAGAAACTTG
LOC_Os06g37500
OsAffx.15797.1.S1_at--1036--3411Chr06:22192370..22192394 (25 bp)
CAGAAACTTGATGCGCTACTGGAGG
LOC_Os06g37500
OsAffx.15797.1.S1_at--629--1931Chr06:22192353..22192377 (25 bp)
ACTGGAGGAGCTGAGCTTCGTCCGG
LOC_Os06g37500
OsAffx.15797.1.S1_at--688--8291Chr06:22192328..22192352 (25 bp)
GGCTTCGTGTTCGTCAGGGACGCAT
LOC_Os06g37500
OsAffx.15797.1.S1_at--965--8791Chr06:22192321..22192345 (25 bp)
TGTTCGTCAGGGACGCATCGTACGT
LOC_Os06g37500
OsAffx.15797.1.S1_at--697--1811Chr06:22192309..22192333 (25 bp)
ACGCATCGTACGTGGAGTTCCTTGA
LOC_Os06g37500
OsAffx.15797.1.S1_at--626--971Chr06:22192270..22192294 (25 bp)
AGGAGCAGAATCTCCGGTCAGCCGG
LOC_Os06g37500
OsAffx.15797.1.S1_at--744--8751Chr06:22192124..22192147 (24 bp)
TGTACCCCATGAATAAGGACATGTG
LOC_Os06g37500
OsAffx.15797.1.S1_at--1003--9411Chr06:22191582..22191606 (25 bp)
TCGGGCTACTGAGGTCGGCGGTGGC
LOC_Os06g37500
OsAffx.15797.1.S1_at--651--4691Chr06:22191480..22191504 (25 bp)
GCGGCATCGGGTGCAGGCAGTACCT
LOC_Os06g37500
Target Sequence 
GTACTATGACGATAACACCGCCGCTTCCGTGGATCAGAAACTTGATGCGCTACTGGAGGAGCTGAGCTTCGTCCGGGGCT
TCGTGTTCGTCAGGGACGCATCGTACGTGGAGTTCCTTGACCGGGTTGGGCGGGAGGAGCAGAATCTCCGGTCAGCCGGC
GCCTGGGACGTGCCCCACCCATGGCTCAACCTCTTCGTCCCCAGGTCTCGCATCCTCCACTTCGACGCCGCCGTCTTCAA
GGGCATCCTCCGCAACGCCAACCCCGTCGGCCTCATCCTCATGTACCCCATGAATAAGGACATGTGGGATGACAGGATGA
CGGCGATGACGCCGGACGAGGACGTGTTCTACGCCGTCGGGCTACTGAGGTCGGCGGTGGCCGGTGGCAGCGGCGGCGAC
GTGGAGCAGCTGGAGAGGGAGAACGCGGCGGTGCTGGAGCTCTGCGACCTCGCCGGCGGCGGCATCGGGTGCAGGCAGTA
CCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis