Browse Element(s) Details


Os.54616.1.S1_at

Description gb:AK106254.1
DB_XREF= gi:32991463
TID=Os.54616.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-E07, full insert sequence.
FL= gb:AK106254.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3757011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37550OsAffx.15800.1.S1_at9/116+22235414..22238578hypothetical protein
LOC_Os06g37560Os.6322.1.S1_at11/116+22244389..22250775Beta-galactosidase precursor, putative, expressed
LOC_Os06g37570Os.54616.1.S1_at11/116+22253357..22254986expressed protein
LOC_Os06g37580OsAffx.27978.1.S1_at11/116+22255656..22256036hypothetical protein
LOC_Os06g37590OsAffx.15801.1.S1_at11/116+22257064..22258164oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g37600OsAffx.27979.1.S1_x_at11/116+22259998..22261041expressed protein
LOC_Os06g37600OsAffx.27979.1.S1_at11/116+22259998..22261041expressed protein
LOC_Os06g37610Os.6027.1.A1_at11/116+22265803..22270123Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os06g37620OsAffx.27980.1.S1_at11/116+22270192..22274419U-box domain containing protein, expressed
LOC_Os06g37630OsAffx.15802.1.S1_at1/116+22279908..22285497transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54616.1.S1_at--957--8531Chr06:22254388..22254412 (25 bp)
TGGAGGCTATCCTTTTACCGCTGGT
LOC_Os06g37570
Os.54616.1.S1_at--726--731Chr06:22254433..22254457 (25 bp)
ATGTTCCTCAGTGCGATGTGCTCAC
LOC_Os06g37570
Os.54616.1.S1_at--1015--771Chr06:22254448..22254472 (25 bp)
ATGTGCTCACACGAATTGTCAAGGA
LOC_Os06g37570
Os.54616.1.S1_at--1079--9171Chr06:22254497..22254521 (25 bp)
TGCCTTCTGCCATAGATTGCTTTCA
LOC_Os06g37570
Os.54616.1.S1_at--803--10251Chr06:22254547..22254571 (25 bp)
TTTGTATGCCTGAGCACCGGAGCAA
LOC_Os06g37570
Os.54616.1.S1_at--55--8591Chr06:22254586..22254610 (25 bp)
TGGTTTGGACAGAATCCCTCTTTGC
LOC_Os06g37570
Os.54616.1.S1_at--261--3051Chr06:22254598..22254622 (25 bp)
AATCCCTCTTTGCACTGTTGTACAG
LOC_Os06g37570
Os.54616.1.S1_at--974--6231Chr06:22254689..22254713 (25 bp)
GATGGCATCAAAGCTCCCAAGATCA
LOC_Os06g37570
Os.54616.1.S1_at--1032--211Chr06:22254719..22254743 (25 bp)
ATTTGGTAATTTTCTGCTCTGCTTC
LOC_Os06g37570
Os.54616.1.S1_at--1116--3531Chr06:22254743..22254767 (25 bp)
CATCTCGAAATGTTGGCGCGTATCT
LOC_Os06g37570
Os.54616.1.S1_at--1157--5511Chr06:22254803..22254827 (25 bp)
GAAAACTGACACTTTCCTGACTAAA
LOC_Os06g37570
Target Sequence 
TGGAGGCTATCCTTTTACCGCTGGTTCTTAGAAAGGAAGGGCTAAATGTTCCTCAGTGCGATGTGCTCACACGAATTGTC
AAGGATTGCATGCATCCGTTGCATGTCACTGCCTTCTGCCATAGATTGCTTTCAGGGGATGAGAGAGAGTGGAGGCCAGT
TTGTATGCCTGAGCACCGGAGCAACATCAGTAGTAATTTGGTTTGGACAGAATCCCTCTTTGCACTGTTGTACAGCATAC
TGAATCAAGACATTTGCTTGACATCAAGCAGCACCGAAAATCTAGTGTCTGTGATTGATGAGATGGCATCAAAGCTCCCA
AGATCACTGAAATTTGGTAATTTTCTGCTCTGCTTCATCTCGAAATGTTGGCGCGTATCTAAGATTCACAGCGTTTTGCT
AGAGAGAGCTGCTGAGAAAACTGACACTTTCCTGACTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis