Browse Element(s) Details


OsAffx.27980.1.S1_at

Description tigr:9634.m03588
TID=OsAffx.27980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=U-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3762011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37560Os.6322.1.S1_at11/116+22244389..22250775Beta-galactosidase precursor, putative, expressed
LOC_Os06g37570Os.54616.1.S1_at11/116+22253357..22254986expressed protein
LOC_Os06g37580OsAffx.27978.1.S1_at11/116+22255656..22256036hypothetical protein
LOC_Os06g37590OsAffx.15801.1.S1_at11/116+22257064..22258164oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g37600OsAffx.27979.1.S1_x_at11/116+22259998..22261041expressed protein
LOC_Os06g37600OsAffx.27979.1.S1_at11/116+22259998..22261041expressed protein
LOC_Os06g37610Os.6027.1.A1_at11/116+22265803..22270123Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os06g37620OsAffx.27980.1.S1_at11/116+22270192..22274419U-box domain containing protein, expressed
LOC_Os06g37630OsAffx.15802.1.S1_at1/116+22279908..22285497transposon protein, putative, Mariner sub-class
LOC_Os06g37640OsAffx.15802.1.S1_at11/116+22291249..22300033expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27980.1.S1_at--651--10751Chr06:22271040..22271064 (25 bp)
TTGACAGTTCTCAGATTGATTGGCC
LOC_Os06g37620
OsAffx.27980.1.S1_at--491--10791Chr06:22271025..22271049 (25 bp)
TTGATTGGCCAATCGCTGAGGCAGA
LOC_Os06g37620
OsAffx.27980.1.S1_at--463--10811Chr06:22270987..22271011 (25 bp)
TTGGCGGTGCGGTGTACAGCTTTAA
LOC_Os06g37620
OsAffx.27980.1.S1_at--446--2111Chr06:22270953..22270977 (25 bp)
ACAGGCCTAGCCTTGAATCGGAGGT
LOC_Os06g37620
OsAffx.27980.1.S1_at--502--3051Chr06:22270938..22270962 (25 bp)
AATCGGAGGTGCTGCCAGAGATCGA
LOC_Os06g37620
OsAffx.27980.1.S1_at--1100--6031Chr06:22270921..22270945 (25 bp)
GAGATCGAGAGCATTCTGAGCAGAA
LOC_Os06g37620
OsAffx.27980.1.S1_at--627--5051Chr06:22270902..22270926 (25 bp)
GCAGAATTACTGCTTCTCCCACATT
LOC_Os06g37620
OsAffx.27980.1.S1_at--680--9791Chr06:22270878..22270902 (25 bp)
TAAGAAGTCCAAACGCAGCTGTGCC
LOC_Os06g37620
OsAffx.27980.1.S1_at--810--10331Chr06:22270628..22270652 (25 bp)
TTTATCCATAATTCCCAACCATTCC
LOC_Os06g37620
OsAffx.27980.1.S1_at--1102--1731Chr06:22270611..22270635 (25 bp)
ACCATTCCTTGCGTGTGGCGATACA
LOC_Os06g37620
OsAffx.27980.1.S1_at--468--7671Chr06:22270552..22270576 (25 bp)
GGGATTTACTACTTTCTTTGTGGCT
LOC_Os06g37620
Target Sequence 
TTGACAGTTCTCAGATTGATTGGCCAATCGCTGAGGCAGAGATCTTGGCAAAATTGGCGGTGCGGTGTACAGCTTTAAAA
TGTAGAGACAGGCCTAGCCTTGAATCGGAGGTGCTGCCAGAGATCGAGAGCATTCTGAGCAGAATTACTGCTTCTCCCAC
ATTAAGAAGTCCAAACGCAGCTGTGCCGAGCCACTTCATCTGCCCAATATTGCAGGAGGTAATGGATGACCCTTATGTTG
CTGCTGATGGGCACACCTACGAGCACAGGGCAATAAAAGCTTGGCTCAAGAAACACAAGACATCCCCTGTCACAAAACAA
AGGCTCCAATATTTATCCATAATTCCCAACCATTCCTTGCGTGTGGCGATACAACAATGGAAATCGCAGTCATCTTGATG
TAGTTATGGGATTTACTACTTTCTTTGTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis