Browse Element(s) Details


OsAffx.15083.1.S1_at

Description tigr:9633.m04024
TID=OsAffx.15083.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4329011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43240Os.25185.1.S1_at11/115+25075780..25080241Jacalin-like lectin domain containing protein, expressed
LOC_Os05g43252Os.420.1.S2_at11/115+25081106..25086087expressed protein
LOC_Os05g43252Os.420.1.S1_at11/115+25081106..25086087expressed protein
LOC_Os05g43264NANA5+25092528..25093185NA
LOC_Os05g43280Os.7504.2.S1_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S2_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280OsAffx.15082.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43290OsAffx.15083.1.S1_at11/115+25103589..25104529hypothetical protein
LOC_Os05g43300Os.15545.1.S1_at11/115+25105050..25109889H1flk, putative, expressed
LOC_Os05g43310Os.5215.1.S1_at11/115+25110262..25111505Photosystem II reaction centre W protein containing protein, expressed
LOC_Os05g43320OsAffx.27290.1.S1_at11/115+25111479..25113208hypothetical protein
LOC_Os05g43330Os.29067.2.S1_at3/115+25117442..25117980hypothetical protein
LOC_Os05g43340OsAffx.22171.1.S1_at1/115+25121226..25124129retrotransposon protein, putative, unclassified
LOC_Os05g43350NANA5+25125622..25130445retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15083.1.S1_at--878--2751Chr05:25103948..25103972 (25 bp)
AAGACAGGGCTAAGAATTGGAACAC
LOC_Os05g43290
OsAffx.15083.1.S1_at--70--2191Chr05:25103915..25103939 (25 bp)
ACACAGTAGTGGTCAGCATCGCTGA
LOC_Os05g43290
OsAffx.15083.1.S1_at--1066--9651Chr05:25103903..25103927 (25 bp)
TCAGCATCGCTGATTGCCCTGATAG
LOC_Os05g43290
OsAffx.15083.1.S1_at--570--6591Chr05:25103892..25103916 (25 bp)
GATTGCCCTGATAGCGAACTTGCTT
LOC_Os05g43290
OsAffx.15083.1.S1_at--947--4591Chr05:25103879..25103903 (25 bp)
GCGAACTTGCTTGCAGAACGAGTAT
LOC_Os05g43290
OsAffx.15083.1.S1_at--459--8151Chr05:25103814..25103875 (25 bp)
GGAAACATTTTTGCTGAGAACCAAG
LOC_Os05g43290
OsAffx.15083.1.S1_at--86--1711Chr05:25103795..25103819 (25 bp)
ACCAAGTACTGGAATGGAGTTGCAT
LOC_Os05g43290
OsAffx.15083.1.S1_at--962--8031Chr05:25103780..25103804 (25 bp)
GGAGTTGCATATACCTACTGCTATG
LOC_Os05g43290
OsAffx.15083.1.S1_at--594--3471Chr05:25103749..25103773 (25 bp)
CAGGTCTAATGTTTGTTGCCCACTA
LOC_Os05g43290
OsAffx.15083.1.S1_at--1007--6671Chr05:25103735..25103759 (25 bp)
GTTGCCCACTATACTCAGGAGTCAG
LOC_Os05g43290
OsAffx.15083.1.S1_at--469--5731Chr05:25103678..25103702 (25 bp)
GACTGGACCAATATCGAGATCGGTA
LOC_Os05g43290
Target Sequence 
AAGACAGGGCTAAGAATTGGAACACAGAGAAAAACACAGTAGTGGTCAGCATCGCTGATTGCCCTGATAGCGAACTTGCT
TGCAGAACGAGTATGATGGAAACATTTTTGCTGAGAACCAAGTACTGGAATGGAGTTGCATATACCTACTGCTATGCAGT
AGCAGGTCTAATGTTTGTTGCCCACTATACTCAGGAGTCAGGTCAAAGACTAAAAGTACGTGAACATGGGGTAGACTGGA
CCAATATCGAGATCGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis