Browse Element(s) Details


OsAffx.15081.1.S1_at

Description tigr:9633.m04018
TID=OsAffx.15081.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cysteine proteinase (EC 3.4.22.-) (similarity) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4323010/11papain-like cysteine peptidase XBCP3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43220Os.46785.2.S1_x_at5/115+25050447..25054444retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g43220OsAffx.30226.2.S1_x_at1/115+25050447..25054444retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g43220OsAffx.442.1.S1_x_at1/115+25050447..25054444retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g43230OsAffx.15081.1.S1_at10/115+25070837..25074449papain-like cysteine peptidase XBCP3, putative, expressed
LOC_Os05g43240Os.25185.1.S1_at11/115+25075780..25080241Jacalin-like lectin domain containing protein, expressed
LOC_Os05g43252Os.420.1.S2_at11/115+25081106..25086087expressed protein
LOC_Os05g43252Os.420.1.S1_at11/115+25081106..25086087expressed protein
LOC_Os05g43264NANA5+25092528..25093185NA
LOC_Os05g43280Os.7504.2.S1_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S2_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280OsAffx.15082.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15081.1.S1_at--625--4351Chr05:25073541..25073565 (25 bp)
CCAAATGCAGCCTTCTTACCTATTG
LOC_Os05g43230
OsAffx.15081.1.S1_at--459--10451Chr05:25073556..25073580 (25 bp)
TTACCTATTGCCCTGAAGGATCCAC
LOC_Os05g43230
OsAffx.15081.1.S1_at--534--9111Chr05:25073582..25073606 (25 bp)
TGCTGCTGCTCCTGGCGTGTCCTGG
LOC_Os05g43230
OsAffx.15081.1.S1_at--932--7571Chr05:25073606..25073630 (25 bp)
GGGCTATGCCTTTCCTGGAGTTGTT
LOC_Os05g43230
OsAffx.15081.1.S1_at--608--4451Chr05:25073613..25073637 (25 bp)
GCCTTTCCTGGAGTTGTTGTGAACT
LOC_Os05g43230
OsAffx.15081.1.S1_at--307--2571Chr05:25073634..25073658 (25 bp)
AACTGGATAACGCAGTTTGCTGCAA
LOC_Os05g43230
OsAffx.15081.1.S1_at--537--6851Chr05:25073648..25073672 (25 bp)
GTTTGCTGCAAGGATAATCGCTATT
LOC_Os05g43230
OsAffx.15081.1.S1_at--1144--351Chr05:25073661..25073685 (25 bp)
ATAATCGCTATTGCTGCCCTCATGA
LOC_Os05g43230
OsAffx.15081.1.S1_at--123--8451NONE
GGCCAGCCAACGATGCTTCAAGGCA
NONE
OsAffx.15081.1.S1_at--109--9771Chr05:25073958..25073982 (25 bp)
TAATGGCAACTTCTCTGTCATGGAG
LOC_Os05g43230
OsAffx.15081.1.S1_at--200--9491Chr05:25074005..25074029 (25 bp)
TCTCCAAAGTTCCTTCTTTGGGTGG
LOC_Os05g43230
Target Sequence 
CCAAATGCAGCCTTCTTACCTATTGCCCTGAAGGATCCACCTGCTGCTGCTCCTGGCGTGTCCTGGGGCTATGCCTTTCC
TGGAGTTGTTGTGAACTGGATAACGCAGTTTGCTGCAAGGATAATCGCTATTGCTGCCCTCATGACTACCCGGTTTGTGA
TACGGCCAGCCAACGATGCTTCAAGGCAAATAATGGCAACTTCTCTGTCATGGAGGGAGGGAGTAGGAAACAACCTTTCT
CCAAAGTTCCTTCTTTGGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis