Browse Element(s) Details


Os.22464.1.S1_at

Description gb:AK120249.1
DB_XREF= gi:37989872
TID=Os.22464.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.22464 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033090E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013045D05, full insert sequence.
FL= gb:AK120249.1 gb:AK102312.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4980011/11Phosphatidylinositol-4-phosphate 5-kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49770Os.6670.1.S1_at11/113+28279127..28288339Oxysterol-binding protein, expressed
LOC_Os03g49770Os.57422.1.S1_x_at10/113+28279127..28288339Oxysterol-binding protein, expressed
LOC_Os03g49780OsAffx.25649.1.S1_at11/113+28292772..28293512hypothetical protein
LOC_Os03g49790OsAffx.25844.2.S1_at1/113+28294606..28295892Pattern formation protein EMB30, putative, expressed
LOC_Os03g49800Os.22464.1.S1_at11/113+28307285..28311784Phosphatidylinositol-4-phosphate 5-kinase 1, putative, expressed
LOC_Os03g49810OsAffx.13426.1.S1_at9/113+28313027..28314013hypothetical protein
LOC_Os03g49820OsAffx.3558.1.S1_at7/113+28321020..28324333hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016307molecular_functionphosphatidylinositol phosphate kinase activity
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22464.1.S1_at--1116--8731Chr03:28307799..28307823 (25 bp)
TGTAAATTCCATTCAAAGGCCAGAG
LOC_Os03g49800
Os.22464.1.S1_at--283--2951Chr03:28307784..28307808 (25 bp)
AAGGCCAGAGCACCGGCAATGATTT
LOC_Os03g49800
Os.22464.1.S1_at--575--10391Chr03:28307751..28307775 (25 bp)
TTTTGGTAGGTTTCTGTGCACGGTA
LOC_Os03g49800
Os.22464.1.S1_at--1013--3551Chr03:28307701..28307725 (25 bp)
CATCTTCATCTACTGGGATCCGTTA
LOC_Os03g49800
Os.22464.1.S1_at--48--7951Chr03:28307686..28307710 (25 bp)
GGATCCGTTAAAGCGGCTCATCGGC
LOC_Os03g49800
Os.22464.1.S1_at--97--7051Chr03:28307656..28307680 (25 bp)
GTAAAGCCTCAACCCAGGAGCACAG
LOC_Os03g49800
Os.22464.1.S1_at--588--7051Chr03:28307631..28307655 (25 bp)
GTAATCGGGTTTGCAAAGCGGTTTG
LOC_Os03g49800
Os.22464.1.S1_at--382--3911Chr03:28307577..28307601 (25 bp)
CTGGATTTTCAGAGGCAGCCACGAC
LOC_Os03g49800
Os.22464.1.S1_at--287--5651Chr03:28307519..28307543 (25 bp)
GACAGATTGGTACTTCCAGTTCCCT
LOC_Os03g49800
Os.22464.1.S1_at--1117--9211Chr03:28307505..28307529 (25 bp)
TCCAGTTCCCTAGTAGTTCTTTCTT
LOC_Os03g49800
Os.22464.1.S1_at--356--7031Chr03:28307330..28307354 (25 bp)
GTACAGATACACTTCGATCCAGAGA
LOC_Os03g49800
Target Sequence 
TGTAAATTCCATTCAAAGGCCAGAGCACCGGCAATGATTTGAAGATGGTTTTGGTAGGTTTCTGTGCACGGTAAAGAATA
TCCATTATCACGAACGATCATCTTCATCTACTGGGATCCGTTAAAGCGGCTCATCGGCCACCGGTAAAGCCTCAACCCAG
GAGCACAGGTAATCGGGTTTGCAAAGCGGTTTGATGCAAATTCGTTGCAAGAACTGGAATGGCTGGATTTTCAGAGGCAG
CCACGACAGAGGCATCTGTAAATTTTGTGATTTGGTGGGTGACAGATTGGTACTTCCAGTTCCCTAGTAGTTCTTTCTTT
CTTTTCTTTTTTTTCCNTTTTGTTAGGGATTCCTTACNGCTTCAGTTTTCCCCCTTTTATATATCTGTTGGATGTAGAAG
GGGACAGGGAAATTTTTGTTTCCAGAAAGAGGATTTAAGGCTGTAGCAAGCAGTGAATAATGAAGATCATGTACAGATAC
ACTTCGATCCAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis