Browse Element(s) Details


OsAffx.25844.2.S1_at

Description tigr:9633.m02504
TID=OsAffx.25844.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2754011/11Pattern formation protein EMB30, putative
LOC_Os03g497901/11Pattern formation protein EMB30, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27510OsAffx.14850.1.S1_x_at9/115+15923646..15924609hypothetical protein
LOC_Os05g27510Os.24478.1.S1_at6/115+15923646..15924609hypothetical protein
LOC_Os05g27520OsAffx.14851.1.S1_at11/115+15929458..15932338expressed protein
LOC_Os05g27520Os.14876.1.S1_at5/115+15929458..15932338expressed protein
LOC_Os05g27530Os.28554.1.S1_at11/115+15941088..15945585Ras family protein, expressed
LOC_Os05g27540OsAffx.25844.2.S1_at11/115+15948154..15949687Pattern formation protein EMB30, putative
LOC_Os05g27550OsAffx.4443.1.S1_at11/115+15950224..15951362F-box domain containing protein
LOC_Os05g27560Os.47463.1.S1_x_at3/115+15952254..15962063transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27560Os.14491.2.S1_x_at3/115+15952254..15962063transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27570OsAffx.27044.1.S1_at11/115+15966889..15968454Protein of unknown function, DUF614 containing protein
LOC_Os05g27580OsAffx.14853.1.S1_at11/115+15969031..15972672Wound-induced protein WI12 containing protein

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Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0007047biological_processcell wall organization and biogenesis
GO:0007155biological_processcell adhesion
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009880biological_processembryonic pattern specification
GO:0009942biological_processlongitudinal axis specification
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25844.2.S1_at--921--6052Chr05:15948846..15948870 (25 bp)
GAGTTGGTGTTCAAGTCCGGCTACT
LOC_Os05g27540
OsAffx.25844.2.S1_at--1063--8611Chr05:15948850..15948874 (25 bp)
TGGTGTTCAAGTCCGGCTACTCTGA
LOC_Os05g27540
OsAffx.25844.2.S1_at--920--7471Chr05:15949550..15949574 (25 bp)
GTGTGGGACCAATGCAGGCATGCAT
LOC_Os05g27540
OsAffx.25844.2.S1_at--680--3011Chr05:15949560..15949584 (25 bp)
AATGCAGGCATGCATATGTTGCACA
LOC_Os05g27540
OsAffx.25844.2.S1_at--1007--3571Chr05:15949572..15949596 (25 bp)
CATATGTTGCACAGCTGGGATTGGT
LOC_Os05g27540
OsAffx.25844.2.S1_at--957--2151Chr05:15949582..15949606 (25 bp)
ACAGCTGGGATTGGTGCACGCATAC
LOC_Os05g27540
OsAffx.25844.2.S1_at--934--5091Chr05:15949597..15949621 (25 bp)
GCACGCATACGGGTGCGCGCTACTT
LOC_Os05g27540
OsAffx.25844.2.S1_at--507--7691Chr05:15949607..15949631 (25 bp)
GGGTGCGCGCTACTTGCTAATCTAG
LOC_Os05g27540
OsAffx.25844.2.S1_at--450--4852Chr09:21827454..21827477 (24 bp)
GCTACTTGCTAATCTAGCGCGTATG
NONE
OsAffx.25844.2.S1_at--966--3731Chr05:15949623..15949647 (25 bp)
CTAATCTAGCGCGTATGCATCAATT
LOC_Os05g27540
OsAffx.25844.2.S1_at--28--4651Chr05:15949633..15949657 (25 bp)
GCGTATGCATCAATTAGCATTCCTG
LOC_Os05g27540
Target Sequence 
GAGTTGGTGTTCAAGTCCGGCTACTCTGACCCGGGCAACGCCTGGAGCAGCTCAAGCTCAAGCTTCTCCTCCTCGTCGAT
GGTGGCGGCGGCAGCGACGATGATGATGATGGAGGACGCGTCGCGGATGGGCAACCTGGCGACGAGCATGTTCATCAAGC
TGGCCGAGGCGTTGCGCAAGACGAGCCTAGTCCAGCGAGAGGAGGTGTGGGACCAATGCAGGCATGCATATGTTGCACAG
CTGGGATTGGTGCACGCATACGGGTGCGCGCTACTTGCTAATCTAGCGCGTATGCATCAATTAGCATTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25844.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis