Browse Element(s) Details


Os.28554.1.S1_at

Description gb:AK111385.1
DB_XREF= gi:32996594
TID=Os.28554.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28554 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-B11, full insert sequence.
FL= gb:AK111385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2753011/11Ras family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27500OsAffx.27043.1.S1_at11/115+15916461..15920308carboxyl-terminal peptidase, putative
LOC_Os05g27510OsAffx.14850.1.S1_x_at9/115+15923646..15924609hypothetical protein
LOC_Os05g27510Os.24478.1.S1_at6/115+15923646..15924609hypothetical protein
LOC_Os05g27520OsAffx.14851.1.S1_at11/115+15929458..15932338expressed protein
LOC_Os05g27520Os.14876.1.S1_at5/115+15929458..15932338expressed protein
LOC_Os05g27530Os.28554.1.S1_at11/115+15941088..15945585Ras family protein, expressed
LOC_Os05g27540OsAffx.25844.2.S1_at11/115+15948154..15949687Pattern formation protein EMB30, putative
LOC_Os05g27550OsAffx.4443.1.S1_at11/115+15950224..15951362F-box domain containing protein
LOC_Os05g27560Os.47463.1.S1_x_at3/115+15952254..15962063transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27560Os.14491.2.S1_x_at3/115+15952254..15962063transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27570OsAffx.27044.1.S1_at11/115+15966889..15968454Protein of unknown function, DUF614 containing protein
LOC_Os05g27580OsAffx.14853.1.S1_at11/115+15969031..15972672Wound-induced protein WI12 containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0045022biological_processearly endosome to late endosome transport
GO:0045045biological_processsecretory pathway
GO:0005624cellular_componentmembrane fraction
GO:0005769cellular_componentearly endosome
GO:0010009cellular_componentexternal side of endosome membrane
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28554.1.S1_at--893--2411Chr05:15941565..15941589 (25 bp)
AAAACAGCTCCGATGGCTTGTCACT
LOC_Os05g27530
Os.28554.1.S1_at--759--4931Chr05:15941550..15941574 (25 bp)
GCTTGTCACTGGCTCATCCAAAGAA
LOC_Os05g27530
Os.28554.1.S1_at--598--2311Chr05:15941494..15941518 (25 bp)
AAAGAACCTCCACCAAAGTGCTGCT
LOC_Os05g27530
Os.28554.1.S1_at--477--1131Chr05:15941478..15941502 (25 bp)
AGTGCTGCTCATAGCGAGATTCCAA
LOC_Os05g27530
Os.28554.1.S1_at--603--10491Chr05:15941387..15941411 (25 bp)
TTAACTTTGCTCATGCTCTTTTGGA
LOC_Os05g27530
Os.28554.1.S1_at--940--571Chr05:15941250..15941274 (25 bp)
ATGCCGAAGAAGTTCATGGCCCTTT
LOC_Os05g27530
Os.28554.1.S1_at--912--851Chr05:15941235..15941259 (25 bp)
ATGGCCCTTTGTATATCTGTAACTC
LOC_Os05g27530
Os.28554.1.S1_at--745--2531Chr05:15941215..15941239 (25 bp)
AACTCACAGGTTGCTTATTTACTAG
LOC_Os05g27530
Os.28554.1.S1_at--955--7671Chr05:15941176..15941200 (25 bp)
GGGTTATTTTGATCATGTGCGTCGA
LOC_Os05g27530
Os.28554.1.S1_at--192--7511Chr05:15941112..15941136 (25 bp)
GTGGTTATTCCATCTGAACCTGCAA
LOC_Os05g27530
Os.28554.1.S1_at--380--2611Chr05:15941096..15941120 (25 bp)
AACCTGCAATGTAAAGCTTCCGTCC
LOC_Os05g27530
Target Sequence 
AAAACAGCTCCGATGGCTTGTCACTGGCTCATCCAAAGAAAGGCATTTTAATCGNCGACGATGAACCTGAGAAAGAACCT
CCACCAAAGTGCTGCTCATAGCGAGATTCCAATGCAAATCACGTGGGCATAATGTCATAGAAACCTGCAATTGATATGTG
AAGGATCAAATCCTTGCATTAACTTTGCTCATGCTCTTTTGGAGCTCAGGAGCAATGCAAGTGTATACTGGTTGATTATT
TTTAGCTTGTGTAAATACTAAACTCAGTTCATGAAATTGTTGTCAAATATAGTTGTTCGATGATGACGATTCGATATGCC
GAAGAAGTTCATGGCCCTTTGTATATCTGTAACTCACAGGTTGCTTATTTACTAGCTGTTGTTTTGAGGGGGTTATTTTG
ATCATGTGCGTCGAAATAATTGTGTCGTGTTGACTGCTGAGTGTACATGTATCGTGGTTATTCCATCTGAACCTGCAATG
TAAAGCTTCCGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis