Browse Element(s) Details


Os.14876.1.S1_at

Description gb:BI807888
DB_XREF= gi:15855076
DB_XREF=B005H06
CLONE=B005H06
TID=Os.14876.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14876 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g268906/11Guanine nucleotide-binding protein alpha-1 subunit, putative, expressed
LOC_Os05g275205/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26850OsAffx.4438.1.S1_at10/115+15507523..15509095hypothetical protein
LOC_Os05g26860OsAffx.27030.1.S1_at11/115+15509826..15512408hypothetical protein
LOC_Os05g26870Os.55476.1.S1_at11/115+15512863..15513786expressed protein
LOC_Os05g26880OsAffx.4439.1.S1_at11/115+15523704..15525324hypothetical protein
LOC_Os05g26890Os.5302.1.S1_a_at11/115+15531427..15537142Guanine nucleotide-binding protein alpha-1 subunit, putative, expressed
LOC_Os05g26890Os.14876.1.S1_at6/115+15531427..15537142Guanine nucleotide-binding protein alpha-1 subunit, putative, expressed
LOC_Os05g26902Os.15221.1.S1_a_at11/115+15539557..15544518Chaperone protein dnaJ, putative, expressed
LOC_Os05g26902Os.54610.1.S1_at8/115+15539557..15544518Chaperone protein dnaJ, putative, expressed
LOC_Os05g26914Os.15221.1.S1_a_at11/115+15548386..15554869Chaperone protein dnaJ, putative, expressed
LOC_Os05g26914Os.54610.1.S1_at9/115+15548386..15554869Chaperone protein dnaJ, putative, expressed
LOC_Os05g26926Os.15221.1.S1_a_at3/115+15557732..15560381Chaperone protein dnaJ, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001789biological_processG-protein signaling, coupled to S1P second messenger (sphingosine kinase activating)
GO:0006499biological_processN-terminal protein myristoylation
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0008219biological_processcell death
GO:0009738biological_processabscisic acid mediated signaling
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009845biological_processseed germination
GO:0010119biological_processregulation of stomatal movement
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0005886cellular_componentplasma membrane
GO:0004871molecular_functionsignal transducer activity
GO:0016247molecular_functionchannel regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14876.1.S1_at--157--3511Chr05:15535494..15535518 (25 bp)
CATGTATGCAGCTCATGGATCCTGA
LOC_Os05g26890
Os.14876.1.S1_at--680--1111NONE
AGTGAGGCTGAAACACACCCAAAAT
NONE
Os.14876.1.S1_at--983--6771NONE
GTTAGCACTCGGACTTACTGAACAA
NONE
Os.14876.1.S1_at--700--6011Chr05:15535254..15535279 (25 bp)
GAGAGTTCCACATTTGGTTTCTTCT
LOC_Os05g26890
Os.14876.1.S1_at--307--8591Chr05:15535240..15535264 (25 bp)
TGGTTTCTTCTAATTCAGCTGGTAA
LOC_Os05g26890
Os.14876.1.S1_at--955--9652Chr05:15932072..15932097 (25 bp)
TCAGCTGGTAACAGTCTCAGACATT
LOC_Os05g27520
Os.14876.1.S1_at--745--9892Chr05:15931995..15932019 (25 bp)
TACTTCTTGGTATTGCTAACTTTCC
LOC_Os05g27520
Os.14876.1.S1_at--465--151Chr05:15535120..15535144 (25 bp)
ATTTAAGTGGTCATTTTCCTTGTCA
LOC_Os05g26890
Os.14876.1.S1_at--104--10811Chr05:15931948..15931972 (25 bp)
TTGTCACAATTATCTGCGCTACCTT
LOC_Os05g27520
Os.14876.1.S1_at--253--3831Chr05:15931935..15931959 (25 bp)
CTGCGCTACCTTTAGTATCTATTGG
LOC_Os05g27520
Os.14876.1.S1_at--738--8771Chr05:15931897..15931921 (25 bp)
TGTTTCTGTTGTTCCTATTTACCTC
LOC_Os05g27520
Target Sequence 
CATGTATGCAGCTCATGGATCCTGAGATCTAGACGTCAACGTGCTTCCTGGAAAGAGAGAGGCTCAGGCATGAGAGCATA
CCTCTAAAATAATGTCCGTGCTTACCTGTGTGCTTGATAACATGGGCTCATCCTGTACAGATCTCATTCTTTAAGTGAGG
CTGAAACACACCCAAAATGCAAAAGTAAGTTAGCACTCGGACTTACTGAACAAGTAAATGCTAACTCAATTCTTGATTTG
AGAGTTCCACATTTGGTTTCTTCTAATTCAGCTGGTAACAGTCTCAGACATTGACAGGCGAATTTTGCAAGAGACAAAGC
AGACACACATCCACAAGCTCTTACTTCTTGGTATTGCTAACTTTCCCAATTTAAGTGGTCATTTTCCTTGTCACAATTAT
CTGCGCTACCTTTAGTATCTATTGGTTCAGAAAATTAATTGTTTCTGTTGTTCCTATTTACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis