Browse Element(s) Details


Os.5302.1.S1_a_at

Description gb:D38232.1
DB_XREF= gi:540532
TID=Os.5302.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5302 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for G protein alpha subunit, complete cds.
PROD=G protein alpha subunit
FL= gb:L28001.1 gb:D38232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2689011/11Guanine nucleotide-binding protein alpha-1 subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26850OsAffx.4438.1.S1_at10/115+15507523..15509095hypothetical protein
LOC_Os05g26860OsAffx.27030.1.S1_at11/115+15509826..15512408hypothetical protein
LOC_Os05g26870Os.55476.1.S1_at11/115+15512863..15513786expressed protein
LOC_Os05g26880OsAffx.4439.1.S1_at11/115+15523704..15525324hypothetical protein
LOC_Os05g26890Os.5302.1.S1_a_at11/115+15531427..15537142Guanine nucleotide-binding protein alpha-1 subunit, putative, expressed
LOC_Os05g26890Os.14876.1.S1_at6/115+15531427..15537142Guanine nucleotide-binding protein alpha-1 subunit, putative, expressed
LOC_Os05g26902Os.15221.1.S1_a_at11/115+15539557..15544518Chaperone protein dnaJ, putative, expressed
LOC_Os05g26902Os.54610.1.S1_at8/115+15539557..15544518Chaperone protein dnaJ, putative, expressed
LOC_Os05g26914Os.15221.1.S1_a_at11/115+15548386..15554869Chaperone protein dnaJ, putative, expressed
LOC_Os05g26914Os.54610.1.S1_at9/115+15548386..15554869Chaperone protein dnaJ, putative, expressed
LOC_Os05g26926Os.15221.1.S1_a_at3/115+15557732..15560381Chaperone protein dnaJ, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001789biological_processG-protein signaling, coupled to S1P second messenger (sphingosine kinase activating)
GO:0006499biological_processN-terminal protein myristoylation
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0008219biological_processcell death
GO:0009738biological_processabscisic acid mediated signaling
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009845biological_processseed germination
GO:0010119biological_processregulation of stomatal movement
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0005886cellular_componentplasma membrane
GO:0004871molecular_functionsignal transducer activity
GO:0016247molecular_functionchannel regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5302.1.S1_a_at--1100--2891Chr05:15532146..15532169 (24 bp)
AAGGTTCCTTTAAGTGTGTGCGAGT
LOC_Os05g26890
Os.5302.1.S1_a_at--359--6811Chr05:15532120..15532144 (25 bp)
GTTTAAAGACTACCAGCCTATTGCA
LOC_Os05g26890
Os.5302.1.S1_a_at--552--3371Chr05:15532107..15532131 (25 bp)
CAGCCTATTGCACCTGGGAAACAGG
LOC_Os05g26890
Os.5302.1.S1_a_at--730--5471Chr05:15531913..15532101 (25 bp)
GAACATGCATATGAGTTTGTCAAGA
LOC_Os05g26890
Os.5302.1.S1_a_at--50--5351Chr05:15531887..15531911 (25 bp)
GAAGTTTGAAGAGCTCTACTTCCAG
LOC_Os05g26890
Os.5302.1.S1_a_at--1145--5931Chr05:15531863..15531887 (25 bp)
GAGCAGCAAGCCTGACCGTGTGGAC
LOC_Os05g26890
Os.5302.1.S1_a_at--911--8531Chr05:15531843..15531867 (25 bp)
TGGACCGCGTCTTCAAAATCTACAG
LOC_Os05g26890
Os.5302.1.S1_a_at--1133--2411Chr05:15531829..15531853 (25 bp)
AAAATCTACAGAACTACGGCCCTAG
LOC_Os05g26890
Os.5302.1.S1_a_at--1057--9892Chr05:15531815..15531839 (25 bp)
TACGGCCCTAGACCAGAAACTTGTA
LOC_Os05g26890
Os.5302.1.S1_a_at--842--5791Chr05:15531756..15531780 (25 bp)
GACGCTCCAGGGAAGGAACTTGATT
LOC_Os05g26890
Os.5302.1.S1_a_at--935--2012Chr05:15531721..15531745 (25 bp)
ACTAGGTTGTAAGTCACACAGGGAA
LOC_Os05g26890
Target Sequence 
AAGGTTCCTTTAAGTGTGTGCGAGTGGTTTAAAGACTACCAGCCTATTGCACCTGGGAAACAGGAGGTTGAACATGCATA
TGAGTTTGTCAAGAAGAAGTTTGAAGAGCTCTACTTCCAGAGCAGCAAGCCTGACCGTGTGGACCGCGTCTTCAAAATCT
ACAGAACTACGGCCCTAGACCAGAAACTTGTAAAGAAGACATTCAAGTTGATTGATGAGAGCATGAGACGCTCCAGGGAA
GGAACTTGATTCAGAGCTAAGACTAGGTTGTAAGTCACACAGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5302.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis