Browse Element(s) Details


Os.54610.1.S1_at

Description gb:AK106242.1
DB_XREF= gi:32991451
TID=Os.54610.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54610 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-C12, full insert sequence.
FL= gb:AK106242.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g269149/11Chaperone protein dnaJ, putative, expressed
LOC_Os05g269028/11Chaperone protein dnaJ, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26880OsAffx.4439.1.S1_at11/115+15523704..15525324hypothetical protein
LOC_Os05g26890Os.5302.1.S1_a_at11/115+15531427..15537142Guanine nucleotide-binding protein alpha-1 subunit, putative, expressed
LOC_Os05g26890Os.14876.1.S1_at6/115+15531427..15537142Guanine nucleotide-binding protein alpha-1 subunit, putative, expressed
LOC_Os05g26902Os.15221.1.S1_a_at11/115+15539557..15544518Chaperone protein dnaJ, putative, expressed
LOC_Os05g26902Os.54610.1.S1_at8/115+15539557..15544518Chaperone protein dnaJ, putative, expressed
LOC_Os05g26914Os.15221.1.S1_a_at11/115+15548386..15554869Chaperone protein dnaJ, putative, expressed
LOC_Os05g26914Os.54610.1.S1_at9/115+15548386..15554869Chaperone protein dnaJ, putative, expressed
LOC_Os05g26926Os.15221.1.S1_a_at3/115+15557732..15560381Chaperone protein dnaJ, putative, expressed
LOC_Os05g26940OsAffx.27033.2.S1_s_at11/115+15565223..15566578Protein kinase domain containing protein
LOC_Os05g26940OsAffx.27033.1.S1_at11/115+15565223..15566578Protein kinase domain containing protein
LOC_Os05g26954Os.5882.1.S1_at11/115+15578580..15584341Saposin-like type B, region 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54610.1.S1_at--184--4313Chr05:15561592..15561616 (25 bp)
GCGAATCGCCTAGTTACCCGGCGGG
NONE
Os.54610.1.S1_at--604--9173Chr05:15561522..15561546 (25 bp)
TGCCCTGCTTTCTTTGGCTCACGAG
NONE
Os.54610.1.S1_at--606--5872Chr05:15552605..15552629 (25 bp)
GAGCCCGCTCGAGCTAGACAACTAG
LOC_Os05g26914
Os.54610.1.S1_at--512--2533Chr05:15561472..15561496 (25 bp)
AACTAGCCGAGCCTAGCTTGGTTTT
NONE
Os.54610.1.S1_at--386--4933Chr05:25021702..25021723 (22 bp)
GCTTGGTTTTCTAGCTCGTTAGGAT
NONE
Os.54610.1.S1_at--756--352Chr05:15552545..15552569 (25 bp)
ATAAGCCGAGCCTAGCTAGACCGAG
LOC_Os05g26914
Os.54610.1.S1_at--1068--1573Chr05:15561307..15561331 (25 bp)
AGCTCGAGACGAGGTGCCACTTCTT
NONE
Os.54610.1.S1_at--298--10411NONE
TTCTTGCCCTTTTGCCGCAGTTCTT
NONE
Os.54610.1.S1_at--493--9651Chr05:15552227..15552251 (25 bp)
TCAAGAGGCTTTTGTCCTAATTTGC
LOC_Os05g26914
Os.54610.1.S1_at--1089--4751Chr05:15509536..15509555 (20 bp)
GCTGCAGCCCGGTAGGTATTATGTA
NONE
Os.54610.1.S1_at--880--10373Chr05:15561066..15561090 (25 bp)
TTTTGTGGTTGGTAAATTCGGCAGC
NONE
Target Sequence 
GCGAATCGCCTAGTTACCCGGCGGGCGACACCCCTACTCCCGTGTGGCCGCGCGTCCTCGTCGTCTTGCTTGCCCTGCTT
TCTTTGGCTCACGAGCCAAACGAGCCCGCTCGAGCTAGACAACTAGCCGAGCCTAGCTTGGTTTTCTAGCTCGTTAGGAT
AATAAGCCGAGCCTAGCTAGACCGAGCCGAGCTGGCTCGACATCCACCCCCTACACGCGTGCCTTTGCCCAAATCTTATC
TCCCGGGAGGCTCACTTCCCTCCCCGAGTGGCTGCGACGACCTCCGCAGCTCGAGACGAGGTGCCACTTCTTCTTCTCTC
TCTCCATCCCCCATTCCTCCCCTCTCTTCCCGTGTCCCGTCGTCCACAGCTCCCCGACCAAATCCCTAGCCCTACTATTC
CCGCGCCCGCCCCTCCCTCGCGTGGTCACGCCCGACAGCGCCGTGCCGCCACCGCTTCTTGCCCTTTTGCCGCAGTTCTT
CAAGAGGCTTTTGTCCTAATTTGCTGCAGCCCGGTAGGTATTATGTATTTTTGTGGTTGGTAAATTCGGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54610.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis