Browse Element(s) Details


OsAffx.27033.2.S1_s_at

Description tigr:9633.m02433
TID=OsAffx.27033.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Avr9Cf-9 rapidly elicited protein 216
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2694011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26902Os.15221.1.S1_a_at11/115+15539557..15544518Chaperone protein dnaJ, putative, expressed
LOC_Os05g26902Os.54610.1.S1_at8/115+15539557..15544518Chaperone protein dnaJ, putative, expressed
LOC_Os05g26914Os.15221.1.S1_a_at11/115+15548386..15554869Chaperone protein dnaJ, putative, expressed
LOC_Os05g26914Os.54610.1.S1_at9/115+15548386..15554869Chaperone protein dnaJ, putative, expressed
LOC_Os05g26926Os.15221.1.S1_a_at3/115+15557732..15560381Chaperone protein dnaJ, putative, expressed
LOC_Os05g26940OsAffx.27033.2.S1_s_at11/115+15565223..15566578Protein kinase domain containing protein
LOC_Os05g26940OsAffx.27033.1.S1_at11/115+15565223..15566578Protein kinase domain containing protein
LOC_Os05g26954Os.5882.1.S1_at11/115+15578580..15584341Saposin-like type B, region 1 family protein, expressed
LOC_Os05g26970NANA5+15588392..15593533retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27033.2.S1_s_at--448--5192Chr05:15565555..15565579 (25 bp)
GCAATGGAGCTAAATGCTTTCGACA
LOC_Os05g26940
OsAffx.27033.2.S1_s_at--142--4892Chr05:15565540..15565564 (25 bp)
GCTTTCGACATAATCGGGTTCGCCT
LOC_Os05g26940
OsAffx.27033.2.S1_s_at--1063--2072Chr05:15565533..15565557 (25 bp)
ACATAATCGGGTTCGCCTCGGGATG
LOC_Os05g26940
OsAffx.27033.2.S1_s_at--1104--7892Chr05:15565524..15565548 (25 bp)
GGTTCGCCTCGGGATGCGATCTAAG
LOC_Os05g26940
OsAffx.27033.2.S1_s_at--1034--4272Chr05:15565518..15565542 (25 bp)
CCTCGGGATGCGATCTAAGCGGGTT
LOC_Os05g26940
OsAffx.27033.2.S1_s_at--656--352Chr05:15565506..15565530 (25 bp)
ATCTAAGCGGGTTGATCGGTCCATT
LOC_Os05g26940
OsAffx.27033.2.S1_s_at--625--2672Chr05:15565502..15565526 (25 bp)
AAGCGGGTTGATCGGTCCATTGCCA
LOC_Os05g26940
OsAffx.27033.2.S1_s_at--966--6632Chr05:15565496..15565520 (25 bp)
GTTGATCGGTCCATTGCCAGATCGA
LOC_Os05g26940
OsAffx.27033.2.S1_s_at--481--7792Chr05:15565489..15565513 (25 bp)
GGTCCATTGCCAGATCGAGTTCGAT
LOC_Os05g26940
OsAffx.27033.2.S1_s_at--184--92Chr05:15565484..15565508 (25 bp)
ATTGCCAGATCGAGTTCGATTCGTC
LOC_Os05g26940
OsAffx.27033.2.S1_s_at--1060--5592Chr05:15565334..15565358 (25 bp)
GAAATTCACTGCATATGTGAGGGTT
LOC_Os05g26940
Target Sequence 
GCAATGGAGCTAAATGCTTTCGACATAATCGGGTTCGCCTCGGGATGCGATCTAAGCGGGTTGATCGGTCCATTGCCAGA
TCGAGTTCGATTCGTCGTGCCGGGTGCGGATTCCAGGTCAGTTCTGGACAGAGTTGAGAAGCTAGGGCGAGAGGAAGGGC
TTGTAGTGAGGAGGAAAGAGGAAGAATGGCGTGGAGGAGTTCATGTGGAGGCAACAAGTGGGAAATTCACTGCATATGTG
AGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27033.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis