Browse Element(s) Details


Os.5882.1.S1_at

Description gb:AK107763.1
DB_XREF= gi:32992972
TID=Os.5882.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5882 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-A11, full insert sequence.
FL= gb:AK107763.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2695411/11Saposin-like type B, region 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26914Os.15221.1.S1_a_at11/115+15548386..15554869Chaperone protein dnaJ, putative, expressed
LOC_Os05g26914Os.54610.1.S1_at9/115+15548386..15554869Chaperone protein dnaJ, putative, expressed
LOC_Os05g26926Os.15221.1.S1_a_at3/115+15557732..15560381Chaperone protein dnaJ, putative, expressed
LOC_Os05g26940OsAffx.27033.2.S1_s_at11/115+15565223..15566578Protein kinase domain containing protein
LOC_Os05g26940OsAffx.27033.1.S1_at11/115+15565223..15566578Protein kinase domain containing protein
LOC_Os05g26954Os.5882.1.S1_at11/115+15578580..15584341Saposin-like type B, region 1 family protein, expressed
LOC_Os05g26970NANA5+15588392..15593533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g26980OsAffx.14842.1.S1_at11/115+15601304..15601642hypothetical protein
LOC_Os05g26990Os.38770.1.S1_at11/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.7867.3.S1_at11/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.7867.1.S1_x_at10/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.46330.1.S1_at7/115+15603938..15608892Phospholipid-transporting ATPase 2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5882.1.S1_at--854--651Chr05:15581136..15581160 (25 bp)
ATGAAGATTCTTGCGACCTTTGCCA
LOC_Os05g26954
Os.5882.1.S1_at--446--4611Chr05:15581124..15581148 (25 bp)
GCGACCTTTGCCATGAGGTGGTTGA
LOC_Os05g26954
Os.5882.1.S1_at--691--7731Chr05:15581108..15581132 (25 bp)
GGTGGTTGATGAGATCCTTACTGAT
LOC_Os05g26954
Os.5882.1.S1_at--1148--6431Chr05:15579221..15579245 (25 bp)
GATAATCGAGGTACTTCTGAAAGGA
LOC_Os05g26954
Os.5882.1.S1_at--501--6011Chr05:15578901..15578925 (25 bp)
GAGAGATTTCTGCAATTCTATCCAT
LOC_Os05g26954
Os.5882.1.S1_at--1098--8211Chr05:15578867..15578891 (25 bp)
GGCAAGATTATTCCTGCTAGAGCAG
LOC_Os05g26954
Os.5882.1.S1_at--589--10311Chr05:15578827..15578851 (25 bp)
TTTCTGCTGCCTGAATTATCCTGAG
LOC_Os05g26954
Os.5882.1.S1_at--115--551Chr05:15578810..15578834 (25 bp)
ATCCTGAGCGGTGTACAGTTTTACA
LOC_Os05g26954
Os.5882.1.S1_at--668--9491Chr05:15578755..15578779 (25 bp)
TCTGCCCAGGCAATGTATAGTACAT
LOC_Os05g26954
Os.5882.1.S1_at--618--2211Chr05:15578680..15578704 (25 bp)
ACAAGCCTATTTTGTTGTGTCCATA
LOC_Os05g26954
Os.5882.1.S1_at--400--4331Chr05:15578660..15578684 (25 bp)
CCATAGAACACGAGGGCCATGTATA
LOC_Os05g26954
Target Sequence 
ATGAAGATTCTTGCGACCTTTGCCATGAGGTGGTTGATGAGATCCTTACTGATCTTGAAAATCCTGATGTGGAGCTTAAG
ATAATCGAGGTACTTCTGAAAGGATGCAACAATGCAGAAAATTTTGTACAAAAGTGCAAGAAGTTGATCATCCAAAATGC
ACCAATCATACTAGAACATATCAAGAAGTTTCTGAAGAAGAGAGATTTCTGCAATTCTATCCATGTATGTGGAGGCAAGA
TTATTCCTGCTAGAGCAGGAGACCTTGGGGCCCTTTCTGCTGCCTGAATTATCCTGAGCGGTGTACAGTTTTACAACAAA
GTTTAAGGGTGTACATGCAAAAAAATCTGCCCAGGCAATGTATAGTACATTTATTTGCGTCTGTAGAAAAATAAAGCAAG
CAGTCAACTTTGTAAAGAATACAAGCCTATTTTGTTGTGTCCATAGAACACGAGGGCCATGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis