Browse Element(s) Details


OsAffx.14842.1.S1_at

Description tigr:9633.m02445
TID=OsAffx.14842.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2698011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26954Os.5882.1.S1_at11/115+15578580..15584341Saposin-like type B, region 1 family protein, expressed
LOC_Os05g26970NANA5+15588392..15593533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g26980OsAffx.14842.1.S1_at11/115+15601304..15601642hypothetical protein
LOC_Os05g26990Os.38770.1.S1_at11/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.7867.3.S1_at11/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.7867.1.S1_x_at10/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.46330.1.S1_at7/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g27000NANA5+15620769..15622793hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14842.1.S1_at--908--8551Chr05:15601563..15601587 (25 bp)
TGGAGGATAGCAGCGACCACACTGT
LOC_Os05g26980
OsAffx.14842.1.S1_at--405--7951Chr05:15601559..15601583 (25 bp)
GGATAGCAGCGACCACACTGTTGTG
LOC_Os05g26980
OsAffx.14842.1.S1_at--641--3331Chr05:15601544..15601568 (25 bp)
CACTGTTGTGGACCAGCTTGCGGAA
LOC_Os05g26980
OsAffx.14842.1.S1_at--449--1071Chr05:15601461..15601485 (25 bp)
AGGGATCCAGCGGTCGCGACGTCAT
LOC_Os05g26980
OsAffx.14842.1.S1_at--214--491Chr05:15601438..15601462 (25 bp)
ATCGTCCCCGGTGACCACAATGGTG
LOC_Os05g26980
OsAffx.14842.1.S1_at--354--4191Chr05:15601432..15601456 (25 bp)
CCCGGTGACCACAATGGTGAGGACA
LOC_Os05g26980
OsAffx.14842.1.S1_at--247--8891Chr05:15601415..15601439 (25 bp)
TGAGGACAACTACCCCAATGACCTC
LOC_Os05g26980
OsAffx.14842.1.S1_at--871--4071Chr05:15601385..15601409 (25 bp)
CGACCTTGACTTCGACATACTTGTC
LOC_Os05g26980
OsAffx.14842.1.S1_at--1103--2051Chr05:15601367..15601391 (25 bp)
ACTTGTCGACAGTATAGTTAGCCCT
LOC_Os05g26980
OsAffx.14842.1.S1_at--384--2051Chr05:15601359..15601383 (25 bp)
ACAGTATAGTTAGCCCTGTCCCTAG
LOC_Os05g26980
OsAffx.14842.1.S1_at--465--10031Chr05:15601353..15601377 (25 bp)
TAGTTAGCCCTGTCCCTAGTGGCCA
LOC_Os05g26980
Target Sequence 
TGGAGGATAGCAGCGACCACACTGTTGTGGACCAGCTTGCGGAAGAGGAGGGGCACTACATCGATGACTCCCACCACCTC
GTCCCCAGCAGCGGCCAAGAGGAGGGATCCAGCGGTCGCGACGTCATCGTCCCCGGTGACCACAATGGTGAGGACAACTA
CCCCAATGACCTCATCCCCGACCTTGACTTCGACATACTTGTCGACAGTATAGTTAGCCCTGTCCCTAGTGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis