Browse Element(s) Details


Os.7867.1.S1_x_at

Description gb:AK111959.1
DB_XREF= gi:37988622
TID=Os.7867.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7867 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-C07, full insert sequence.
FL= gb:AK111959.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2699010/11Phospholipid-transporting ATPase 2, putative
LOC_Os12g423701/11expressed protein
LOC_Os09g033101/11Phospholipid-transporting ATPase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26954Os.5882.1.S1_at11/115+15578580..15584341Saposin-like type B, region 1 family protein, expressed
LOC_Os05g26970NANA5+15588392..15593533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g26980OsAffx.14842.1.S1_at11/115+15601304..15601642hypothetical protein
LOC_Os05g26990Os.38770.1.S1_at11/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.7867.3.S1_at11/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.7867.1.S1_x_at10/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.46330.1.S1_at7/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g27000NANA5+15620769..15622793hypothetical protein
LOC_Os05g27010Os.17273.1.S1_at11/115+15630952..15632647POT family protein, expressed
LOC_Os05g27010OsAffx.14844.1.S1_s_at11/115+15630952..15632647POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7867.1.S1_x_at--579--6232Chr09:1611599..1611623 (25 bp)
GATGGCTCTTTGCAGTACAGTTGTT
LOC_Os09g03310
Os.7867.1.S1_x_at--861--9931Chr05:15604858..15605022 (25 bp)
TACGGTGCTTAGATTTCTTTCAACG
LOC_Os05g26990
Os.7867.1.S1_x_at--1121--652Chr09:1611120..1611142 (23 bp)
ATGAAGCTATTCTTCCTCGTTGTCA
NONE
Os.7867.1.S1_x_at--1144--9352Chr09:1609874..1609898 (25 bp)
TCGAGATCCCTTATTCTACTGCTGT
NONE
Os.7867.1.S1_x_at--431--4732Chr09:1609854..1609878 (25 bp)
GCTGTCCTGATCTTGAGGTGCTTAT
NONE
Os.7867.1.S1_x_at--116--10032Chr09:1609779..1609803 (25 bp)
TAGCAAATGGGTTGCGGCTTCTCCC
NONE
Os.7867.1.S1_x_at--763--8292Chr09:1609764..1609788 (25 bp)
GGCTTCTCCCTGGTAGATCAATGCT
NONE
Os.7867.1.S1_x_at--537--4832Chr09:1609742..1609766 (25 bp)
GCTCACCTATCACGCATTGTAGTAG
NONE
Os.7867.1.S1_x_at--511--4032Chr12:26302816..26302841 (25 bp)
CGTATTCATGAATTCTCCTTCGAGA
LOC_Os12g42370
Os.7867.1.S1_x_at--167--2271Chr05:15603961..15603985 (25 bp)
AAATCTTGTGTTGCTTCAGGATGGA
LOC_Os05g26990
Os.7867.1.S1_x_at--117--6551Chr05:15603938..15603962 (25 bp)
GATTTTTCAATTGGTCCTTGTCTAA
NONE
Target Sequence 
GATGGCTCTTTGCAGTACAGTTGTTCCTATCAAAAGCAATGGTGGTACTATAACATACCAAGCACAATCACAAGACGAGG
AAGCTTTGGTCACTGCTGCATCAAAACTAAATACGGTGCTTAGATTTCTTTCAACGGTTGTAAGTTCTATTATGATTTGT
TGGATATTTTGGAGTTTACTTCCGATCGCAAAAGAATGTCTGCTGTGGTGAAGGATGTCCAGAGTGGGAAGATCCTTCTT
CTTTCTAAAGGAGCTGATGAAGCTATTCTTCCTCGTTGTCATCAAGCTGGTGATGGTAGTTGTTGCTCGAGATCCCTTAT
TCTACTGCTGTCCTGATCTTGAGGTGCTTATCATGATTTCTGGGATAGTATTTTTCACGTTCAAGCAATATCTAATACCT
GTAGCAAATGGGTTGCGGCTTCTCCCTGGTAGATCAATGCTCACCTATCACGCATTGTAGTAGTAAAATTGCTTGAGAAA
TCGTATTCATGAATTCTCCTTCGAGAAATCTTGTGTTGCTTCAGGATGGATTTTTCAATTGGTCCTTGTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7867.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis