Browse Element(s) Details


Os.17273.1.S1_at

Description gb:AK108393.1
DB_XREF= gi:32993602
TID=Os.17273.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F07, full insert sequence.
FL= gb:AK108393.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2701011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26990Os.38770.1.S1_at11/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.7867.3.S1_at11/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.7867.1.S1_x_at10/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.46330.1.S1_at7/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g27000NANA5+15620769..15622793hypothetical protein
LOC_Os05g27010Os.17273.1.S1_at11/115+15630952..15632647POT family protein, expressed
LOC_Os05g27010OsAffx.14844.1.S1_s_at11/115+15630952..15632647POT family protein, expressed
LOC_Os05g27020NANA5+15633923..15637255transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27034Os.14491.2.S1_x_at6/115+15639784..15643495transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27034Os.47463.1.S1_x_at5/115+15639784..15643495transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27050OsAffx.14845.1.S1_at10/115+15649520..15651101Peptide transporter PTR2, putative, expressed
LOC_Os05g27060Os.28346.3.S1_x_at10/115+15654616..15660322retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17273.1.S1_at--550--7291Chr05:15631126..15631150 (25 bp)
GTGCGTGCCGTATAATTTGCGGTTC
LOC_Os05g27010
Os.17273.1.S1_at--648--7291Chr05:15631122..15631146 (25 bp)
GTGCCGTATAATTTGCGGTTCATAC
LOC_Os05g27010
Os.17273.1.S1_at--1132--10151Chr05:15631116..15631140 (25 bp)
TATAATTTGCGGTTCATACTGAGTA
LOC_Os05g27010
Os.17273.1.S1_at--1090--191Chr05:15631112..15631136 (25 bp)
ATTTGCGGTTCATACTGAGTAACTT
LOC_Os05g27010
Os.17273.1.S1_at--1023--4631Chr05:15631108..15631132 (25 bp)
GCGGTTCATACTGAGTAACTTGGTA
LOC_Os05g27010
Os.17273.1.S1_at--943--3851Chr05:15631098..15631122 (25 bp)
CTGAGTAACTTGGTATAGAACTATA
LOC_Os05g27010
Os.17273.1.S1_at--1126--5471Chr05:15631081..15631105 (25 bp)
GAACTATAGATCATCAGCATATACG
LOC_Os05g27010
Os.17273.1.S1_at--900--6431Chr05:15631073..15631097 (25 bp)
GATCATCAGCATATACGTACGGAAT
LOC_Os05g27010
Os.17273.1.S1_at--874--391Chr05:15631069..15631093 (25 bp)
ATCAGCATATACGTACGGAATACAC
LOC_Os05g27010
Os.17273.1.S1_at--1152--6931Chr05:15631057..15631081 (25 bp)
GTACGGAATACACGTATAAAACTAT
LOC_Os05g27010
Os.17273.1.S1_at--607--10171Chr05:15631023..15631047 (25 bp)
TATAATGGACCATACATGGGTTGAA
LOC_Os05g27010
Target Sequence 
GTGCGTGCCGTATAATTTGCGGTTCATACTGAGTAACTTGGTATAGAACTATAGATCATCAGCATATACGTACGGAATAC
ACGTATAAAACTATATATANNNGNATATAATGGACCATACATGGGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis