Browse Element(s) Details


OsAffx.14844.1.S1_s_at

Description tigr:9633.m02448
TID=OsAffx.14844.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY094400 At2g40460T2P4.19
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2701011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26990Os.38770.1.S1_at11/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.7867.3.S1_at11/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.7867.1.S1_x_at10/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.46330.1.S1_at7/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g27000NANA5+15620769..15622793hypothetical protein
LOC_Os05g27010Os.17273.1.S1_at11/115+15630952..15632647POT family protein, expressed
LOC_Os05g27010OsAffx.14844.1.S1_s_at11/115+15630952..15632647POT family protein, expressed
LOC_Os05g27020NANA5+15633923..15637255transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27034Os.14491.2.S1_x_at6/115+15639784..15643495transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27034Os.47463.1.S1_x_at5/115+15639784..15643495transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27050OsAffx.14845.1.S1_at10/115+15649520..15651101Peptide transporter PTR2, putative, expressed
LOC_Os05g27060Os.28346.3.S1_x_at10/115+15654616..15660322retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14844.1.S1_s_at--124--3991Chr05:15631709..15631733 (25 bp)
CGGGTCGGCGCTCCAGGTGGCGGCG
LOC_Os05g27010
OsAffx.14844.1.S1_s_at--352--9191Chr05:15631672..15631696 (25 bp)
TGCCTCGTGGAGCTCCGCCGCATGC
LOC_Os05g27010
OsAffx.14844.1.S1_s_at--843--5631Chr05:15631612..15631636 (25 bp)
GACACCGTCCCGATGAGCATCTTCT
LOC_Os05g27010
OsAffx.14844.1.S1_s_at--425--4011Chr05:15631607..15631631 (25 bp)
CGTCCCGATGAGCATCTTCTGGATG
LOC_Os05g27010
OsAffx.14844.1.S1_s_at--510--5931Chr05:15631598..15631622 (25 bp)
GAGCATCTTCTGGATGCTGCCGCAG
LOC_Os05g27010
OsAffx.14844.1.S1_s_at--886--9171Chr05:15631581..15631605 (25 bp)
TGCCGCAGTACATCCTCATCGGCGT
LOC_Os05g27010
OsAffx.14844.1.S1_s_at--167--4651Chr05:15631560..15631584 (25 bp)
GCGTCGGCGACGTGTTCAGCTCCGT
LOC_Os05g27010
OsAffx.14844.1.S1_s_at--416--8391Chr05:15631555..15631579 (25 bp)
GGCGACGTGTTCAGCTCCGTCGGCA
LOC_Os05g27010
OsAffx.14844.1.S1_s_at--65--7671Chr05:15631498..15631522 (25 bp)
GGGATGCAGAGCCTCGGCACCACCT
LOC_Os05g27010
OsAffx.14844.1.S1_s_at--699--8471Chr05:15631284..15631308 (25 bp)
TGGCGACGAGGTACGAGTACAAGAA
LOC_Os05g27010
OsAffx.14844.1.S1_s_at--257--8551Chr05:15631173..15631197 (25 bp)
TGGAGAGGAGCAAGGTGATCGACGC
LOC_Os05g27010
Target Sequence 
CGGGTCGGCGCTCCAGGTGGCGGCGGTGGCGTGCGCCTGCCTCGTGGAGCTCCGCCGCATGCGCGCGATCCGCGCCGCCT
CCGCCACGGCCGCCCACGACACCGTCCCGATGAGCATCTTCTGGATGCTGCCGCAGTACATCCTCATCGGCGTCGGCGAC
GTGTTCAGCTCCGTCGGCATCCTCGAGTTCTTCTACGAGCAGTCGCCGCAGGGGATGCAGAGCCTCGGCACCACCTTCTT
CACCAGCGGCCTCGGCGTCGGAAACTTCCTCAACAGCCTGCTCGTCACCGCCGTCGACCGCGCCACCAGGGGCGGCGGCG
CCGGCAAGAGCTGGATCGGCGACAACCTCAACGACTCGCACCTCGACTACTACTACGCCTTCCTGCTGCTGCTCGCGGTG
ATCAACCTGGCGGTGTTCGTGTGGGTGGCGACGAGGTACGAGTACAAGAAGGAGTACTTGTCGGACGGCGGGGACGTCGT
CGCCGGGATGGCGTCGCGGGAGACGGAGATGGCCGGCGGCGGCAAGGGGAAGGTGGTGGAGAGGAGCAAGGTGATCGACG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14844.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis