Browse Element(s) Details


OsAffx.4439.1.S1_at

Description tigr:9633.m02434
TID=OsAffx.4439.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2688011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26850OsAffx.4438.1.S1_at10/115+15507523..15509095hypothetical protein
LOC_Os05g26860OsAffx.27030.1.S1_at11/115+15509826..15512408hypothetical protein
LOC_Os05g26870Os.55476.1.S1_at11/115+15512863..15513786expressed protein
LOC_Os05g26880OsAffx.4439.1.S1_at11/115+15523704..15525324hypothetical protein
LOC_Os05g26890Os.5302.1.S1_a_at11/115+15531427..15537142Guanine nucleotide-binding protein alpha-1 subunit, putative, expressed
LOC_Os05g26890Os.14876.1.S1_at6/115+15531427..15537142Guanine nucleotide-binding protein alpha-1 subunit, putative, expressed
LOC_Os05g26902Os.15221.1.S1_a_at11/115+15539557..15544518Chaperone protein dnaJ, putative, expressed
LOC_Os05g26902Os.54610.1.S1_at8/115+15539557..15544518Chaperone protein dnaJ, putative, expressed
LOC_Os05g26914Os.15221.1.S1_a_at11/115+15548386..15554869Chaperone protein dnaJ, putative, expressed
LOC_Os05g26914Os.54610.1.S1_at9/115+15548386..15554869Chaperone protein dnaJ, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4439.1.S1_at--367--7611Chr05:15524275..15524299 (25 bp)
GGGAAATACTAGTCAAGGTCTCACA
LOC_Os05g26880
OsAffx.4439.1.S1_at--1046--6731Chr05:15524309..15524412 (25 bp)
GTTAATAAAACCATCGAGGCTGAAG
LOC_Os05g26880
OsAffx.4439.1.S1_at--568--10031Chr05:15524444..15524468 (25 bp)
TAGACAACCAGGCTTTAACCATCCA
LOC_Os05g26880
OsAffx.4439.1.S1_at--18--11Chr05:15524453..15524477 (25 bp)
AGGCTTTAACCATCCATTGTTGAAA
LOC_Os05g26880
OsAffx.4439.1.S1_at--950--3631Chr05:15524877..15524901 (25 bp)
GTTGAAACCAAGCTCTTTACTAATG
LOC_Os05g26880
OsAffx.4439.1.S1_at--998--6651Chr05:15524911..15524935 (25 bp)
GTTGAAAATCCATTTATATCTTCCA
LOC_Os05g26880
OsAffx.4439.1.S1_at--194--5391Chr05:15524941..15524965 (25 bp)
GAAGCACAACTACCTAGCTACTGCA
LOC_Os05g26880
OsAffx.4439.1.S1_at--1115--1731Chr05:15524952..15524976 (25 bp)
ACCTAGCTACTGCAGAATGCCCTAT
LOC_Os05g26880
OsAffx.4439.1.S1_at--374--3011Chr05:15524967..15524991 (25 bp)
AATGCCCTATAGGAACCATCCCAGT
LOC_Os05g26880
OsAffx.4439.1.S1_at--377--4331Chr05:15524982..15525006 (25 bp)
CCATCCCAGTACTACGCAACAAGAA
LOC_Os05g26880
OsAffx.4439.1.S1_at--820--5531Chr05:15525004..15525028 (25 bp)
GAAACAAGACTATCTCAATTCAGAA
LOC_Os05g26880
Target Sequence 
GGGAAATACTAGTCAAGGTCTCACAAATTATGGGGTTAATAAAACCATCGAGGCTGAAGATGGTGATGTCTATGATTGCA
TCAATATGAATAGACAACCAGGCTTTAACCATCCATTGTTGAAAGATCATACAATTCAGTTGAAACCAAGCTCTTTACTA
ATGGAGATGGATGTTGAAAATCCATTTATATCTTCCATATCAGAAGCACAACTACCTAGCTACTGCAGAATGCCCTATAG
GAACCATCCCAGTACTACGCAACAAGAAACAAGACTATCTCAATTCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis