Browse Element(s) Details


OsAffx.27044.1.S1_at

Description tigr:9633.m02509
TID=OsAffx.27044.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=uncharacterized Cys-rich domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2757011/11Protein of unknown function, DUF614 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27530Os.28554.1.S1_at11/115+15941088..15945585Ras family protein, expressed
LOC_Os05g27540OsAffx.25844.2.S1_at11/115+15948154..15949687Pattern formation protein EMB30, putative
LOC_Os05g27550OsAffx.4443.1.S1_at11/115+15950224..15951362F-box domain containing protein
LOC_Os05g27560Os.47463.1.S1_x_at3/115+15952254..15962063transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27560Os.14491.2.S1_x_at3/115+15952254..15962063transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27570OsAffx.27044.1.S1_at11/115+15966889..15968454Protein of unknown function, DUF614 containing protein
LOC_Os05g27580OsAffx.14853.1.S1_at11/115+15969031..15972672Wound-induced protein WI12 containing protein
LOC_Os05g27590Os.57186.1.S1_at11/115+15980195..15981011Wound-induced protein WI12 containing protein, expressed
LOC_Os05g27600NANA5+15982919..15985405transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27610NANA5+15986824..15989203transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27620Os.47463.1.S1_x_at5/115+15989659..15991866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27620Os.14491.2.S1_x_at4/115+15989659..15991866transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0007568biological_processaging
GO:0009621biological_processresponse to pathogenic fungi
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27044.1.S1_at--464--4531Chr05:15967879..15967903 (25 bp)
GCCGCCATGAACATCCGAGACGAGG
LOC_Os05g27570
OsAffx.27044.1.S1_at--711--651Chr05:15967885..15967909 (25 bp)
ATGAACATCCGAGACGAGGCCGTCG
LOC_Os05g27570
OsAffx.27044.1.S1_at--126--9331Chr05:15968057..15968081 (25 bp)
TCGCCGACTACCTGCGGTGGATGTT
LOC_Os05g27570
OsAffx.27044.1.S1_at--683--9971Chr05:15968065..15968089 (25 bp)
TACCTGCGGTGGATGTTCTGCTGGA
LOC_Os05g27570
OsAffx.27044.1.S1_at--736--8871Chr05:15968111..15968135 (25 bp)
TGAGGACGGCGAACGTCCTGCTCCT
LOC_Os05g27570
OsAffx.27044.1.S1_at--40--2691Chr05:15968242..15968266 (25 bp)
AAGCTGGCATTCCATCATGCAGCTG
LOC_Os05g27570
OsAffx.27044.1.S1_at--1143--631Chr05:15968258..15968282 (25 bp)
ATGCAGCTGCAGTGCCAGTGGACAC
LOC_Os05g27570
OsAffx.27044.1.S1_at--380--3831Chr05:15968264..15968288 (25 bp)
CTGCAGTGCCAGTGGACACGGACGC
LOC_Os05g27570
OsAffx.27044.1.S1_at--359--7231Chr05:15968375..15968399 (25 bp)
GTCGCGAGTCTCAGGCTGAGGAAAT
LOC_Os05g27570
OsAffx.27044.1.S1_at--849--9631Chr05:15968385..15968409 (25 bp)
TCAGGCTGAGGAAATGAGGCCGCCT
LOC_Os05g27570
OsAffx.27044.1.S1_at--1105--6211Chr05:15968400..15968424 (25 bp)
GAGGCCGCCTCTGCAGCCATTGATG
LOC_Os05g27570
Target Sequence 
GCCGCCATGAACATCCGAGACGAGGCCGTCGGCGACGCGGTCGGCGCGGTGGCGGTGGCGCTCTGCGCGCTCGGCCTCCT
CTACGGCGGCTACTGGCGGGCGCGGATGCGGCGGCGGTTCGGGCTCCTCCCCGGGCGGCACGGCGGCGGCGGCGCGTGCT
GCGGCTCGCCGTCCTCGCTCGCCGACTACCTGCGGTGGATGTTCTGCTGGAGCTGCGCGCTGGCGCAGGAGGTGAGGACG
GCGAACGTCCTGCTCCTCGACGCCGACGAGGCTGGCGGCGCCGGAGGGGGAAGCTCAAGCTCCGGCGGCGGCGGGCGAGG
TGACGCCACTCTGCTGCAGCCGTTGCCGCGGGAGAACGGGGTGAAGCTGGCATTCCATCATGCAGCTGCAGTGCCAGTGG
ACACGGACGCGGCCTACGGGCCGCCGGTGAACGGCTCGCCACACCGCGGCAGCGGCGGCGGCGGCGATGAGTCGCCGTTG
CTGCAGAGGCAGCAGGGTCGCGAGTCTCAGGCTGAGGAAATGAGGCCGCCTCTGCAGCCATTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis