Browse Element(s) Details


Os.57186.1.S1_at

Description gb:AK111106.1
DB_XREF= gi:32996315
TID=Os.57186.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57186 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-A02, full insert sequence.
FL= gb:AK111106.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2759011/11Wound-induced protein WI12 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27560Os.47463.1.S1_x_at3/115+15952254..15962063transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27560Os.14491.2.S1_x_at3/115+15952254..15962063transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27570OsAffx.27044.1.S1_at11/115+15966889..15968454Protein of unknown function, DUF614 containing protein
LOC_Os05g27580OsAffx.14853.1.S1_at11/115+15969031..15972672Wound-induced protein WI12 containing protein
LOC_Os05g27590Os.57186.1.S1_at11/115+15980195..15981011Wound-induced protein WI12 containing protein, expressed
LOC_Os05g27600NANA5+15982919..15985405transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27610NANA5+15986824..15989203transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27620Os.47463.1.S1_x_at5/115+15989659..15991866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27620Os.14491.2.S1_x_at4/115+15989659..15991866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27630OsAffx.19542.3.S1_x_at5/115+15995120..15998943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g27640NANA5+16002110..16002379hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57186.1.S1_at--631--3931Chr05:15980709..15980733 (25 bp)
CGGCGTCGTCCTTCGTGTTCGTGCC
LOC_Os05g27590
Os.57186.1.S1_at--633--4011Chr05:15980616..15980640 (25 bp)
CGTACTGGGTCCACGCCTGGGCCGT
LOC_Os05g27590
Os.57186.1.S1_at--939--7311Chr05:15980398..15980422 (25 bp)
GTGCTCGCCATCTGACACGTGGGCC
LOC_Os05g27590
Os.57186.1.S1_at--331--8652Chr12:12624894..12624985 (24 bp)
TGGGCCCACGCATGCATCAATCCTT
NONE
Os.57186.1.S1_at--398--371Chr05:15980364..15980388 (25 bp)
ATCAATCCTTCCTGGCGCGCTGGGT
LOC_Os05g27590
Os.57186.1.S1_at--643--4351Chr05:15980334..15980358 (25 bp)
CCACCTGGCGTCTCGCTGGAAAGTG
LOC_Os05g27590
Os.57186.1.S1_at--214--4191Chr05:15980306..15980330 (25 bp)
CCCCGAATTCATGCGAACGTGTACG
LOC_Os05g27590
Os.57186.1.S1_at--863--4571Chr05:15980294..15980318 (25 bp)
GCGAACGTGTACGTCGTGTAGTACT
LOC_Os05g27590
Os.57186.1.S1_at--1120--7191Chr05:15980282..15980306 (25 bp)
GTCGTGTAGTACTATACTGCACTAT
LOC_Os05g27590
Os.57186.1.S1_at--571--5651Chr05:15980232..15980256 (25 bp)
GACAGACATCTAAATGTGCTGCTTT
LOC_Os05g27590
Os.57186.1.S1_at--349--2291Chr05:15980221..15980245 (25 bp)
AAATGTGCTGCTTTGATGTTGAAAT
LOC_Os05g27590
Target Sequence 
CGGCGTCGTCCTTCGTGTTCGTGCCGCGGCAGGTGGCGGCGGTGGGGCGCGGCGGCGGGTGGGTGGTGGCGGAAGGGTGG
GAGGGGCCACGCGCGTACTGGGTCCACGCCTGGGCCGTCGAGGGCGGCCGCATCACCCGCCTCCGCGAGTACTTCAACAC
CTCCGTCACCGTCCGGGACGTCGGCGGCGGCGGCCACTGCCGGCCGCAGCTCGACGGAGGAGGAGTTCGCCGGCGCGCCG
CCGTGTGCTGGCAGAGCCAACGTGGGCGCGGCGGCGGCGACGACGACGACGACAGGTCGCTGCCTGGCCTCGTGCTCGCC
ATCTGACACGTGGGCCCACGCATGCATCAATCCTTCCTGGCGCGCTGGGTCGGCCCCACCTGGCGTCTCGCTGGAAAGTG
GGCCCCCGAATTCATGCGAACGTGTACGTCGTGTAGTACTATACTGCACTATATCTTTTTTTTTTTTTGAAAAAAAAGAC
AGACATCTAAATGTGCTGCTTTGATGTTGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis