Browse Element(s) Details


Os.2247.1.S1_at

Description gb:AF093630.1
DB_XREF= gi:3885883
GEN=RPL21
TID=Os.2247.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.2247 (NCBI UniGene Cluster)
DEF=Oryza sativa 60S ribosomal protein L21 (RPL21) mRNA, complete cds.
PROD=60S ribosomal protein L21
FL= gb:AF093630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3282011/1160S ribosomal protein L21, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32770Os.46667.1.S1_x_at11/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32770Os.24696.1.A1_s_at10/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32780Os.21180.2.S1_x_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32780OsAffx.23573.1.S1_s_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32790OsAffx.30645.1.S1_at10/1110+16839866..16841873hypothetical protein
LOC_Os10g32800OsAffx.18494.1.S1_at11/1110+16846326..16849108hypothetical protein
LOC_Os10g32810Os.28098.1.S1_at11/1110+16851369..16854068Glycosyl hydrolase family 14 protein, expressed
LOC_Os10g32820Os.2247.1.S1_at11/1110+16854922..1685645460S ribosomal protein L21, putative, expressed
LOC_Os10g32830Os.23241.2.S1_x_at11/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_x_at7/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_at5/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32840NANA10+16861914..16862491hypothetical protein
LOC_Os10g32850Os.10946.1.S1_at11/1110+16862955..16866271expressed protein
LOC_Os10g32860OsAffx.30646.1.S1_at11/1110+16869048..16871141hypothetical protein
LOC_Os10g32870Os.46562.1.S1_at11/1110+16872128..16873689ribosomal protein L11 containing protein, expressed
LOC_Os10g32880Os.37656.1.S1_at11/1110+16874196..16881229PRP19/PSO4 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2247.1.S1_at--238--7131Chr10:16855238..16855262 (25 bp)
GTCATCAGCACGAAGAGGCAGCCGC
LOC_Os10g32820
Os.2247.1.S1_at--764--1051Chr10:16855186..16855210 (25 bp)
AGGGTGCAACACTGGAGACTGTCAC
LOC_Os10g32820
Os.2247.1.S1_at--1103--7711Chr10:16855128..16855152 (25 bp)
GGGTGGTTACTAGGATTTTCAATCT
LOC_Os10g32820
Os.2247.1.S1_at--1000--10371Chr10:16855113..16855137 (25 bp)
TTTTCAATCTATCTGCCTGCGCTAC
LOC_Os10g32820
Os.2247.1.S1_at--420--9151Chr10:16855096..16855120 (25 bp)
TGCGCTACCAATTCTATATCCCTGT
LOC_Os10g32820
Os.2247.1.S1_at--420--9551Chr10:16855084..16855108 (25 bp)
TCTATATCCCTGTCACTCTAATGAG
LOC_Os10g32820
Os.2247.1.S1_at--1001--3791Chr10:16855049..16855073 (25 bp)
CTCGCTCTGAGCATTATTAGTCTGG
LOC_Os10g32820
Os.2247.1.S1_at--718--151Chr10:16855034..16855058 (25 bp)
ATTAGTCTGGACCTTTGTTCTGTGT
LOC_Os10g32820
Os.2247.1.S1_at--886--10791Chr10:16855020..16855044 (25 bp)
TTGTTCTGTGTGGTTCCTGTCAAAA
LOC_Os10g32820
Os.2247.1.S1_at--814--3131Chr10:16854995..16855019 (25 bp)
AATTATTCGTCGCAGATCACTGTGC
LOC_Os10g32820
Os.2247.1.S1_at--769--1471Chr10:16854960..16854984 (25 bp)
AGAATGCTTTATACTGTGCTACTAT
LOC_Os10g32820
Target Sequence 
GTCATCAGCACGAAGAGGCAGCCGCAGGGTCCTAAGCCNGGCTTCATGGTTGAGGGTGCAACACTGGAGACTGTCACCCC
CATCCCGTACGATGTGGTCAATGATCTCAAGGGTGGTTACTAGGATTTTCAATCTATCTGCCTGCGCTACCAATTCTATA
TCCCTGTCACTCTAATGAGTAGAANTTTTGCTCGCTCTGAGCATTATTAGTCTGGACCTTTGTTCTGTGTGGTTCCTGTC
AAAAAATTATTCGTCGCAGATCACTGTGCNGAGTTTTGCAGAATGCTTTATACTGTGCTACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis