Browse Element(s) Details


OsAffx.30646.1.S1_at

Description tigr:9638.m02863
TID=OsAffx.30646.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3286011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32800OsAffx.18494.1.S1_at11/1110+16846326..16849108hypothetical protein
LOC_Os10g32810Os.28098.1.S1_at11/1110+16851369..16854068Glycosyl hydrolase family 14 protein, expressed
LOC_Os10g32820Os.2247.1.S1_at11/1110+16854922..1685645460S ribosomal protein L21, putative, expressed
LOC_Os10g32830Os.23241.2.S1_x_at11/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_x_at7/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_at5/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32840NANA10+16861914..16862491hypothetical protein
LOC_Os10g32850Os.10946.1.S1_at11/1110+16862955..16866271expressed protein
LOC_Os10g32860OsAffx.30646.1.S1_at11/1110+16869048..16871141hypothetical protein
LOC_Os10g32870Os.46562.1.S1_at11/1110+16872128..16873689ribosomal protein L11 containing protein, expressed
LOC_Os10g32880Os.37656.1.S1_at11/1110+16874196..16881229PRP19/PSO4 homolog, putative, expressed
LOC_Os10g32890OsAffx.18496.1.S1_at11/1110+16883498..16884608hypothetical protein
LOC_Os10g32900Os.3195.2.S1_x_at11/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32900Os.52047.1.S1_x_at1/1110+16892289..16895208CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30646.1.S1_at--760--4311Chr10:16869129..16869533 (25 bp)
CCTTCGTGCTGGGTATTGATCTATC
LOC_Os10g32860
OsAffx.30646.1.S1_at--53--8291Chr10:16869752..16869776 (25 bp)
GGCATCAGAAAGTACTTCGCGGCAT
LOC_Os10g32860
OsAffx.30646.1.S1_at--633--8831Chr10:16869817..16869841 (25 bp)
TGATTTTGCAGATTTCTTCTCAGAA
LOC_Os10g32860
OsAffx.30646.1.S1_at--227--3791Chr10:16870262..16870286 (25 bp)
CTCGGGATCTAGCAGTGGTTCGCAT
LOC_Os10g32860
OsAffx.30646.1.S1_at--207--7911Chr10:16870278..16870302 (25 bp)
GGTTCGCATATTAGCTCTGTGTCAA
LOC_Os10g32860
OsAffx.30646.1.S1_at--304--9011Chr10:16870317..16870425 (25 bp)
TGCAAACACAAAGCTCGGAGTCCCT
LOC_Os10g32860
OsAffx.30646.1.S1_at--971--1131Chr10:16870419..16870443 (25 bp)
AGTCCCTGGGTCTTGTAATCTCTTG
LOC_Os10g32860
OsAffx.30646.1.S1_at--70--6291Chr10:16870450..16870474 (25 bp)
GATGTTCATCAAGGTGACACCCCAA
LOC_Os10g32860
OsAffx.30646.1.S1_at--32--2171Chr10:16870466..16870490 (25 bp)
ACACCCCAAGATCCATGTTCATTTA
LOC_Os10g32860
OsAffx.30646.1.S1_at--634--6251Chr10:16871057..16871081 (25 bp)
GATGGGCATGGATCCTACATACTCA
LOC_Os10g32860
OsAffx.30646.1.S1_at--318--10451Chr10:16871088..16871112 (25 bp)
TTAGCAGTTCAGATTGTGGGTCCAG
LOC_Os10g32860
Target Sequence 
CCTTCGTGCTGGGTATTGATCTATCACACAGCATACATTGAAGATGATGAGGGCATCAGAAAGTACTTCGCGGCATTTCA
TCTGCTTGGCAGCTTCCCTGCTGCAGTAATTATTGATGATTTTGCAGATTTCTTCTCAGAAAGGAGCTGTCAGCAAAGAT
ATGGAAATGCTAGGGCTCGGGATCTAGCAGTGGTTCGCATATTAGCTCTGTGTCAAAATGCTGTTGCGCATGCAAACACA
AAGCTCGGAGTCCCTGGGTCTTGTAATCTCTTGCTCTCTGATGTTCATCAAGGTGACACCCCAAGATCCATGTTCATTTA
CAAGAGGTGGATAAGTTCAATATATACAATCCAAGGTGATGGGCATGGATCCTACATACTCAAGAGCATTAGCAGTTCAG
ATTGTGGGTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis