Browse Element(s) Details


Os.3195.2.S1_x_at

Description gb:AK100335.1
DB_XREF= gi:32985544
TID=Os.3195.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3195 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative flowering-time gene protein (OSJNBa0006L06.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081A16, full insert sequence.
FL= gb:AK100335.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3290011/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32860OsAffx.30646.1.S1_at11/1110+16869048..16871141hypothetical protein
LOC_Os10g32870Os.46562.1.S1_at11/1110+16872128..16873689ribosomal protein L11 containing protein, expressed
LOC_Os10g32880Os.37656.1.S1_at11/1110+16874196..16881229PRP19/PSO4 homolog, putative, expressed
LOC_Os10g32890OsAffx.18496.1.S1_at11/1110+16883498..16884608hypothetical protein
LOC_Os10g32900Os.3195.2.S1_x_at11/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32900Os.52047.1.S1_x_at1/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32910OsAffx.18497.1.S1_at11/1110+16897157..16897627hypothetical protein
LOC_Os10g32920Os.3196.1.S1_at11/1110+16897967..1689997960S ribosomal protein L23, putative, expressed
LOC_Os10g32930OsAffx.30647.1.S1_x_at3/1110+16907347..16907616hypothetical protein
LOC_Os10g32930Os.46842.1.S1_at1/1110+16907347..16907616hypothetical protein
LOC_Os10g32940OsAffx.30647.1.S1_x_at11/1110+16914752..16915039expressed protein
LOC_Os10g32950OsAffx.20261.1.S1_at11/1110+16918861..16920479retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0010182biological_processsugar mediated signaling
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3195.2.S1_x_at--566--9391Chr10:16894471..16894495 (25 bp)
TCGATCGGCTCGCAGAATCACGAAG
LOC_Os10g32900
Os.3195.2.S1_x_at--283--5671Chr10:16894677..16894701 (25 bp)
GACATGCTTGATTCTGACGCTCTAG
LOC_Os10g32900
Os.3195.2.S1_x_at--778--5791Chr10:16894692..16894716 (25 bp)
GACGCTCTAGCGCATATCAGCGGGA
LOC_Os10g32900
Os.3195.2.S1_x_at--803--391Chr10:16894707..16894731 (25 bp)
ATCAGCGGGATGAGCTCATACATGT
LOC_Os10g32900
Os.3195.2.S1_x_at--899--10391Chr10:16894811..16894835 (25 bp)
TTTTCCACCCTATTTTGTGCAGATT
LOC_Os10g32900
Os.3195.2.S1_x_at--502--8671Chr10:16894826..16894850 (25 bp)
TGTGCAGATTTAACCGGTCCTTTAC
LOC_Os10g32900
Os.3195.2.S1_x_at--661--7571Chr10:16894841..16894865 (25 bp)
GGTCCTTTACTTCAAACCTCTGAAT
LOC_Os10g32900
Os.3195.2.S1_x_at--735--10071Chr10:16894910..16894934 (25 bp)
TAGGGTCGGTCTGTTGTCATATCAA
LOC_Os10g32900
Os.3195.2.S1_x_at--700--7131Chr10:16894925..16894949 (25 bp)
GTCATATCAATCTGCTTTTCACTTG
LOC_Os10g32900
Os.3195.2.S1_x_at--807--10511Chr10:16894942..16894966 (25 bp)
TTCACTTGTTTGTCATTCTTGCAGG
LOC_Os10g32900
Os.3195.2.S1_x_at--1126--8411Chr10:16895125..16895149 (25 bp)
GGCCTTTAGCAATCTGAGGGTGTAA
LOC_Os10g32900
Target Sequence 
TCGATCGGCTCGCAGAATCACGAAGAGTATGAACNAATTGGCGGCGTGAAGGGAGAAGACATGCTTGATTCTGACGCTCT
AGCGCATATCAGCGGGATGAGCTCATACATGTACAATCACACAGTGGAATCCTGGATATAAACTCATACGACACAGCACT
GAGAAACTCTCTCGAATTGCTTTNTCTTTTNTTTTCCACCCTATTTTGTGCAGATTTAACCGGTCCTTTACTTCAAACCT
CTGAATAATTTTGTAGAAATTTGATGTATGTTGATCAGCTGGAGTTGCTGTAGGGTCGGTCTGTTGTCATATCAATCTGC
TTTTCACTTGTTTGTCATTCTTGCAGGTGAATGAAATAGATAGAGTTAATTTGCATAATTTGTATAGATACAAATGTCGT
GTGTACTTAACGATGTTAGAAGGCATTTTGAAATGCCTAGTATGTTTTGAGGTGGTCCTGGAAACGGTTGAGAAAATTGG
AGCAGGGAAAATCAATATAGATTTAGGCCTTTAGCAATCTGAGGGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3195.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis