Browse Element(s) Details


OsAffx.18496.1.S1_at

Description tigr:9638.m02866
TID=OsAffx.18496.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3289011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32830Os.23241.2.S1_x_at11/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_x_at7/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_at5/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32840NANA10+16861914..16862491hypothetical protein
LOC_Os10g32850Os.10946.1.S1_at11/1110+16862955..16866271expressed protein
LOC_Os10g32860OsAffx.30646.1.S1_at11/1110+16869048..16871141hypothetical protein
LOC_Os10g32870Os.46562.1.S1_at11/1110+16872128..16873689ribosomal protein L11 containing protein, expressed
LOC_Os10g32880Os.37656.1.S1_at11/1110+16874196..16881229PRP19/PSO4 homolog, putative, expressed
LOC_Os10g32890OsAffx.18496.1.S1_at11/1110+16883498..16884608hypothetical protein
LOC_Os10g32900Os.3195.2.S1_x_at11/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32900Os.52047.1.S1_x_at1/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32910OsAffx.18497.1.S1_at11/1110+16897157..16897627hypothetical protein
LOC_Os10g32920Os.3196.1.S1_at11/1110+16897967..1689997960S ribosomal protein L23, putative, expressed
LOC_Os10g32930OsAffx.30647.1.S1_x_at3/1110+16907347..16907616hypothetical protein
LOC_Os10g32930Os.46842.1.S1_at1/1110+16907347..16907616hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18496.1.S1_at--766--991Chr10:16884554..16884578 (25 bp)
AGGTTGTCTCGTATTACTGGCCAAG
LOC_Os10g32890
OsAffx.18496.1.S1_at--235--7171Chr10:16884549..16884573 (25 bp)
GTCTCGTATTACTGGCCAAGGGAAA
LOC_Os10g32890
OsAffx.18496.1.S1_at--420--10871Chr10:16884504..16884528 (25 bp)
TTGGACATTTTCGAAGCTGCTGCTG
LOC_Os10g32890
OsAffx.18496.1.S1_at--341--9131Chr10:16884488..16884508 (21 bp)
TGCTGTCGTTGATTGCAGGAGAACA
LOC_Os10g32890
OsAffx.18496.1.S1_at--990--5971Chr10:16884204..16884227 (24 bp)
GAGAACAACACGACGACACACCGCA
LOC_Os10g32890
OsAffx.18496.1.S1_at--523--2152Chr10:16884178..16884202 (25 bp)
ACAGCACAGGCTAGCGGCGAGTACG
LOC_Os10g32890
OsAffx.18496.1.S1_at--950--7331Chr10:16884137..16884161 (25 bp)
GTGCACATCCATCTACAAGCTCGAG
LOC_Os10g32890
OsAffx.18496.1.S1_at--115--8412Chr10:16884101..16884125 (25 bp)
GGCCCGTTGTCACGATGATGCCGAC
LOC_Os10g32890
OsAffx.18496.1.S1_at--573--5452Chr10:16884041..16884065 (25 bp)
GAACGTGGATTCGAAGGCGTCCTAC
LOC_Os10g32890
OsAffx.18496.1.S1_at--617--551Chr10:16883984..16884008 (25 bp)
ATCCTCCGATGGTCGTGGCGGTGAC
LOC_Os10g32890
OsAffx.18496.1.S1_at--872--791Chr10:16883925..16883949 (25 bp)
ATGGGACGGATCGAGCCTCGAGCTC
LOC_Os10g32890
Target Sequence 
AGGTTGTCTCGTATTACTGGCCAAGGGAAAGATGGAGAATTACAGATGTTTTGGACATTTTCGAAGCTGCTGCTGTCGTT
GATTGCAGGAGAACAACACGACGACACACCGCACACAGCACAGGCTAGCGGCGAGTACGGTGGTACGGCCACCGCGTGCA
CATCCATCTACAAGCTCGAGCTCCCCTCGCCGGCCCGTTGTCACGATGATGCCGACGCCGCTGTCGCCGCCATCGAGCCG
CGGGAGGCCATGAACGTGGATTCGAAGGCGTCCTACCTCATCCAGATCAAGAACCCCGAGCAGCCGCCATCCTCCGATGG
TCGTGGCGGTGACAAGATCAAGCCGCGCGGGCCCAGATCAAGCCGGGATGGGACGGATCGAGCCTCGAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis