Browse Element(s) Details


Os.52047.1.S1_x_at

Description gb:AK067826.1
DB_XREF= gi:32977844
TID=Os.52047.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52047 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013120F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120F12, full insert sequence.
FL= gb:AK067826.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g400091/11Patatin-like phospholipase family protein, expressed
LOC_Os10g329001/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39969NANA11+23327976..23328433NA
LOC_Os11g39980OsAffx.31399.1.S1_at11/1111+23335801..23337085Zinc knuckle family protein
LOC_Os11g39990Os.49524.1.S1_at9/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g39990Os.8523.1.S1_at3/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g39990Os.46576.1.S1_x_at1/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.8523.1.S1_at11/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.56286.1.S1_at11/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.49524.1.S1_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009OsAffx.7370.1.S1_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.52047.1.S1_x_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40030OsAffx.19266.1.S1_s_at11/1111+23364736..23366261Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os11g40040NANA11+23372924..23373412transposon protein, putative, unclassified
LOC_Os11g40050NANA11+23377391..23380693retrotransposon protein, putative, unclassified
LOC_Os11g40060NANA11+23381318..23387472retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0010182biological_processsugar mediated signaling
GO:0016563molecular_functiontranscriptional activator activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52047.1.S1_x_at--344--1812Chr10:16893921..16894180 (25 bp)
ACCCACGCCGCCACGAGGAGAGGAA
LOC_Os10g32900
Os.52047.1.S1_x_at--1031--4611Chr07:10114036..10114060 (25 bp)
GCGAGGCTCCTCCAGTCGTCAGCAA
NONE
Os.52047.1.S1_x_at--10--7551Chr07:10113899..10113923 (25 bp)
GGGCGACTAGCGAGGCTACACCGCC
NONE
Os.52047.1.S1_x_at--841--3351Chr07:10113873..10113897 (25 bp)
CACCGTAGAGCCTCCCTGGAGGAGA
NONE
Os.52047.1.S1_x_at--936--2911Chr07:10113786..10113810 (25 bp)
AAGGATGTCGTGTGGATGGCGCTGT
NONE
Os.52047.1.S1_x_at--360--8651Chr07:10113764..10113788 (25 bp)
TGTGGGTGGTCAAAAAAGCCGGCTT
NONE
Os.52047.1.S1_x_at--904--4911Chr07:10113743..10113767 (25 bp)
GCTTGGTTTTTTTCAAAGGTGTCAG
NONE
Os.52047.1.S1_x_at--670--66512Chr11:20963867..20963888 (22 bp)
GTTGAAAAACCGACACCTATACTAT
NONE
Os.52047.1.S1_x_at--515--5411Chr07:10113669..10113693 (25 bp)
GAACCGATACCTATATTTGTATTAC
NONE
Os.52047.1.S1_x_at--383--10191Chr07:10113656..10113680 (25 bp)
TATTTGTATTACAGGTGTCAGTTCT
NONE
Os.52047.1.S1_x_at--331--7711Chr07:10113643..10113667 (25 bp)
GGTGTCAGTTCTGTTGGCAACTTTT
NONE
Target Sequence 
ACCCACGCCGCCACGAGGAGAGGAAGGCGAGAGGGGCGAGGCTCCTCCAGTCGTCAGCAACCGCGCTGGCCAGCCTACTC
CACCACCGCCGTTGTCGCCGCCACCTTGCCGCACCAGCCTCGGCGCCGGACTCCACCTCACCTGCGCCGCCGCGAGGAGA
GGAAGGCGAGAGGGGCGACTAGCGAGGCTACACCGCCGCACCGTAGAGCCTCCCTGGAGGAGAGGAGGGGCGAGAGAGAG
AGAGAGATGGCGTTGTGTGGCAGTGTGGGATGGATGGATAAGATAAAGGATGTCGTGTGGATGGCGCTGTGGGTGGTCAA
AAAAGCCGGCTTGGTTTTTTTCAAAGGTGTCAGTTCCGTTGAAAAACCGACACCTATACTATAGGTGTCAATTTTTTTAA
TAGAACCGATACCTATATTTGTATTACAGGTGTCAGTTCTGTTGGCAACTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52047.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis