Browse Element(s) Details


Os.56286.1.S1_at

Description gb:AK109768.1
DB_XREF= gi:32994977
TID=Os.56286.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-A03, full insert sequence.
FL= gb:AK109768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4000911/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39969NANA11+23327976..23328433NA
LOC_Os11g39980OsAffx.31399.1.S1_at11/1111+23335801..23337085Zinc knuckle family protein
LOC_Os11g39990Os.49524.1.S1_at9/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g39990Os.8523.1.S1_at3/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g39990Os.46576.1.S1_x_at1/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.8523.1.S1_at11/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.56286.1.S1_at11/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.49524.1.S1_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009OsAffx.7370.1.S1_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40009Os.52047.1.S1_x_at1/1111+23350722..23359556Patatin-like phospholipase family protein, expressed
LOC_Os11g40030OsAffx.19266.1.S1_s_at11/1111+23364736..23366261Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os11g40040NANA11+23372924..23373412transposon protein, putative, unclassified
LOC_Os11g40050NANA11+23377391..23380693retrotransposon protein, putative, unclassified
LOC_Os11g40060NANA11+23381318..23387472retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56286.1.S1_at--534--8971Chr11:23352109..23352133 (25 bp)
TGAAAGCCGCGCTACAATGCGAGAT
LOC_Os11g40009
Os.56286.1.S1_at--361--3031Chr11:23352124..23352148 (25 bp)
AATGCGAGATAGGAGTGCCCATCTA
LOC_Os11g40009
Os.56286.1.S1_at--908--7291Chr11:23352138..23352162 (25 bp)
GTGCCCATCTAAGTGGTGTACCTAA
LOC_Os11g40009
Os.56286.1.S1_at--812--9751Chr11:23352160..23352184 (25 bp)
TAAGTGGTGTACGTACTCGGTCGTC
LOC_Os11g40009
Os.56286.1.S1_at--757--7191Chr11:23352179..23352203 (25 bp)
GTCGTCCCTGGAGTTGCGAGAGATC
LOC_Os11g40009
Os.56286.1.S1_at--64--10011Chr11:23352251..23352275 (25 bp)
TAGCTGCTAGTACACTACCTATATG
LOC_Os11g40009
Os.56286.1.S1_at--923--10651Chr11:23352522..23352546 (25 bp)
TTCCCGCAACAGAGGTGCGTGTCAA
LOC_Os11g40009
Os.56286.1.S1_at--688--9131Chr11:23352537..23352561 (25 bp)
TGCGTGTCAATCTCCGTCAATTATT
LOC_Os11g40009
Os.56286.1.S1_at--1125--3151Chr11:23352580..23352604 (25 bp)
AATTGTACAACTTTCTTCGTCACCT
LOC_Os11g40009
Os.56286.1.S1_at--1045--6051Chr11:23352614..23352638 (25 bp)
GAGTTGAACCAGTCGGTGCATGCAA
LOC_Os11g40009
Os.56286.1.S1_at--926--151Chr11:23352647..23352671 (25 bp)
ATTTTTCCCGAGAATCGATTCGATC
LOC_Os11g40009
Target Sequence 
TGAAAGCCGCGCTACAATGCGAGATAGGAGTGCCCATCTAAGTGGTGTACCTAAGTGGTGTACGTACTCGGTCGTCCCTG
GAGTTGCGAGAGATCAACCTTCGAAAAAAACAAGATCGATTTTCTTTTTCTATATGTACATATAGCTGCTAGTACACTAC
CTATATGAATCATCTAAATCTCTGATCTTAATACAAATGATACACATTTTATGTATTCGCGAAAAAATCATGATGATTAA
TTCAGGAGCTGGACGGGCCGGAGGCGAGGATCGCGGACTACTTCGATGTGATCGCCGGGACGAGCACCGGGGCGCTGATC
ACGTCGATGCTGGCGGCGCCGGACGACAACCGGCAACCGCTCTTCGCCGCCGACGACCTCACCAAGTTCTACCTCGAGAA
CGGGCCCAAGATCTTCCCGCAACAGAGGTGCGTGTCAATCTCCGTCAATTATTTTTTTTAAATATAAAGTGAATTGTACA
ACTTTCTTCGTCACCTTAAATTTTTGAGTTGAACCAGTCGGTGCATGCAAGTCAATATATTTTTCCCGAGAATCGATTCG
ATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis