Browse Element(s) Details


Os.3196.1.S1_at

Description gb:AK120324.1
DB_XREF= gi:37989947
TID=Os.3196.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) 60S ribosomal protein L17 (OSJNBa0006L06.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013057L24, full insert sequence.
FL= gb:AK110621.1 gb:AK120324.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3292011/1160S ribosomal protein L23, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32870Os.46562.1.S1_at11/1110+16872128..16873689ribosomal protein L11 containing protein, expressed
LOC_Os10g32880Os.37656.1.S1_at11/1110+16874196..16881229PRP19/PSO4 homolog, putative, expressed
LOC_Os10g32890OsAffx.18496.1.S1_at11/1110+16883498..16884608hypothetical protein
LOC_Os10g32900Os.3195.2.S1_x_at11/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32900Os.52047.1.S1_x_at1/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32910OsAffx.18497.1.S1_at11/1110+16897157..16897627hypothetical protein
LOC_Os10g32920Os.3196.1.S1_at11/1110+16897967..1689997960S ribosomal protein L23, putative, expressed
LOC_Os10g32930OsAffx.30647.1.S1_x_at3/1110+16907347..16907616hypothetical protein
LOC_Os10g32930Os.46842.1.S1_at1/1110+16907347..16907616hypothetical protein
LOC_Os10g32940OsAffx.30647.1.S1_x_at11/1110+16914752..16915039expressed protein
LOC_Os10g32950OsAffx.20261.1.S1_at11/1110+16918861..16920479retrotransposon protein, putative, LINE subclass
LOC_Os10g32960Os.46065.1.S1_at11/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed
LOC_Os10g32960Os.46065.2.S1_x_at9/1110+16921376..16926192Pex2/Pex12 amino terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3196.1.S1_at--816--5811Chr10:16898190..16898214 (25 bp)
GACCCATTGGTAAGGAGTGCGCCGA
LOC_Os10g32920
Os.3196.1.S1_at--387--4311Chr10:16898187..16898211 (25 bp)
CCATTGGTAAGGAGTGCGCCGACCT
LOC_Os10g32920
Os.3196.1.S1_at--483--10031Chr10:16898125..16898149 (25 bp)
TAGAGCTTGTTTGGAGTAGTAGTTT
LOC_Os10g32920
Os.3196.1.S1_at--1072--6071Chr10:16898112..16898136 (25 bp)
GAGTAGTAGTTTTCAGTTCTGTGCC
LOC_Os10g32920
Os.3196.1.S1_at--617--1191Chr10:16898108..16898132 (25 bp)
AGTAGTTTTCAGTTCTGTGCCGGAT
LOC_Os10g32920
Os.3196.1.S1_at--414--1211Chr10:16898105..16898129 (25 bp)
AGTTTTCAGTTCTGTGCCGGATGTG
LOC_Os10g32920
Os.3196.1.S1_at--246--10331Chr10:16898102..16898126 (25 bp)
TTTCAGTTCTGTGCCGGATGTGATA
LOC_Os10g32920
Os.3196.1.S1_at--26--6731Chr10:16898097..16898121 (25 bp)
GTTCTGTGCCGGATGTGATAATGTG
LOC_Os10g32920
Os.3196.1.S1_at--647--9771Chr10:16898079..16898103 (25 bp)
TAATGTGCTCCAGTTCTTTTTTGTT
LOC_Os10g32920
Os.3196.1.S1_at--911--771Chr10:16898077..16898101 (25 bp)
ATGTGCTCCAGTTCTTTTTTGTTTC
LOC_Os10g32920
Os.3196.1.S1_at--1135--9091Chr10:16898074..16898098 (25 bp)
TGCTCCAGTTCTTTTTTGTTTCCAA
LOC_Os10g32920
Target Sequence 
GACCCATTGGTAAGGAGTGCGCCGACCTCTGGCCAAGGATTGCTAGCGCAGCAAATGCCATTGTCTAGAGCTTGTTTGGA
GTAGTAGTTTTCAGTTCTGTGCCGGATGTGATAATGTGCTCCAGTTCTTTTTTGTTTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis