Browse Element(s) Details


Os.22840.1.A1_at

Description gb:CA759797
DB_XREF= gi:25803836
DB_XREF=BR060010A20B10.ab1
CLONE=BR060010A20B10.ab1
TID=Os.22840.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.22840 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T49959 (A.thaliana) T49959 hypothetical protein F8M21.130 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g414201/11Transmembrane amino acid transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41390NANA1+23750897..23751217hypothetical protein
LOC_Os01g41400OsAffx.11426.1.S1_at11/111+23766357..23768245Transmembrane amino acid transporter protein, expressed
LOC_Os01g41400OsAffx.27081.1.S1_x_at2/111+23766357..23768245Transmembrane amino acid transporter protein, expressed
LOC_Os01g41410OsAffx.23620.1.S1_at11/111+23769009..23769323hypothetical protein
LOC_Os01g41420Os.10355.1.S1_x_at4/111+23774032..23777783Transmembrane amino acid transporter protein, expressed
LOC_Os01g41420Os.10355.1.S1_at2/111+23774032..23777783Transmembrane amino acid transporter protein, expressed
LOC_Os01g41420Os.22840.1.A1_at1/111+23774032..23777783Transmembrane amino acid transporter protein, expressed
LOC_Os01g41430Os.10348.1.S1_at11/111+23782922..23784883UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g41440NANA1+23788034..23789476hypothetical protein
LOC_Os01g41450NANA1+23790584..23792033Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os01g41460NANA1+23799067..23801318retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22840.1.A1_at--1113--1031NONE
AGGTGACGCTGAACCTGCCCTTCGG
NONE
Os.22840.1.A1_at--990--8971NONE
TGAACCTGCCCTTCGGCAAGCTCTA
NONE
Os.22840.1.A1_at--810--5791NONE
GACGCTGGTGAACCCCATGGCCAAG
NONE
Os.22840.1.A1_at--745--7751NONE
GGTGAACCCCATGGCCAAGTACGCG
NONE
Os.22840.1.A1_at--858--3491Chr01:23775030..23775052 (23 bp)
CATGGCCAAGTACGCGCTGCTCGTG
LOC_Os01g41420
Os.22840.1.A1_at--998--7151NONE
GTCTCTGACCCGAGGCAGCGTGCCG
NONE
Os.22840.1.A1_at--738--7071NONE
GTCATTTATCGGCTCGTTCCTTAGG
NONE
Os.22840.1.A1_at--1093--10331NONE
TTTATCGGCTCGTTCCTTAGGGTCA
NONE
Os.22840.1.A1_at--77--10151NONE
TATCGGCTCGTTCCTTAGGGTCATG
NONE
Os.22840.1.A1_at--796--10651NONE
TTCCTTAGGGTCATGGCGACCGTGT
NONE
Os.22840.1.A1_at--884--10071NONE
TAGGGTCATGGCGACCGTGTTGTTC
NONE
Target Sequence 
AGGTGACGCTGAACCTGCCCTTCGGCAAGCTCTACACCAAGATCGCCATCGTGATGACGCTGGTGAACCCCATGGCCAAG
TACGCGCTGCTCGTGGCGCCGATCACGGCGGCCGTCGAGGAGAGGCTGTCTCTGACCCGAGGCAGCGTGCCGGTGAGGGT
GGCCATCAGCACCGCCATCCTTGCCAGCACGGTGGTGGTGGCGTTGACGGTGCCTTTTTTTGGCTACCTCATGTCATTTA
TCGGCTCGTTCCTTAGGGTCATGGCGACCGTGTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22840.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis