Browse Element(s) Details


Os.23655.1.A1_at

Description gb:AK111022.1
DB_XREF= gi:32996231
TID=Os.23655.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-G11, full insert sequence.
FL= gb:AK111022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2734011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27304OsAffx.14846.1.S1_at11/115+15788413..15795503POT family protein, expressed
LOC_Os05g27304OsAffx.4441.1.S1_at10/115+15788413..15795503POT family protein, expressed
LOC_Os05g27320OsAffx.27039.1.S1_at11/115+15795989..15802290VHS domain containing protein, expressed
LOC_Os05g27340Os.23655.1.A1_at11/115+15810616..15812343expressed protein
LOC_Os05g27350Os.56345.1.S1_at9/115+15816894..15818029hypothetical protein
LOC_Os05g27360NANA5+15830651..15831136hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23655.1.A1_at--495--10591Chr05:15810919..15810943 (25 bp)
TTCTCGTCACCGTGAGGAGCGGCGA
LOC_Os05g27340
Os.23655.1.A1_at--991--5331Chr05:15811843..15811867 (25 bp)
GAAGTACATGTATTCATGCCACCAA
LOC_Os05g27340
Os.23655.1.A1_at--1124--5151Chr05:15811891..15811915 (25 bp)
GCAAGCTACAGGCTCATAGGAAATA
LOC_Os05g27340
Os.23655.1.A1_at--577--7631Chr05:15811946..15812068 (25 bp)
GGGACTCCATTGTTTCTCAGACAAA
LOC_Os05g27340
Os.23655.1.A1_at--1116--10431Chr05:15812113..15812137 (25 bp)
TTAGAGTGACCATTTACCCAGGAAA
LOC_Os05g27340
Os.23655.1.A1_at--989--8831Chr05:15812138..15812162 (25 bp)
TGATACACTTCTTGTCATGGCAATG
LOC_Os05g27340
Os.23655.1.A1_at--209--5631Chr05:15812188..15812212 (25 bp)
GACACACAATCGGAATGCCTTTTTG
LOC_Os05g27340
Os.23655.1.A1_at--1161--5571Chr05:15812215..15812239 (25 bp)
GAAATGATAACTTCCTGCCAGCATA
LOC_Os05g27340
Os.23655.1.A1_at--974--11Chr05:15812265..15812289 (25 bp)
ATTGACCAGATTGTTTACGCCCTTA
LOC_Os05g27340
Os.23655.1.A1_at--904--6351Chr05:15812303..15812327 (25 bp)
GATGCCTCATTCTTCTGTCATTCAG
LOC_Os05g27340
Os.23655.1.A1_at--472--8731Chr05:15812318..15812342 (25 bp)
TGTCATTCAGCAAATTCTCTTTACT
LOC_Os05g27340
Target Sequence 
TTCTCGTCACCGTGAGGAGCGGCGAGGGAGAGTGGCAAGCATTCAGAGGAAACAGTTTGGATTATAAAGACATAATTTAC
ACGGCAAAATCAATATCAGTTTGTTCAAATCGAAATGAAGTACATGTATTCATGCCACCAAGAAGCAATTTTCAAGATAC
GAAAGCAAGCTACAGGCTCATAGGAAATACATCCCGGAGAGCATGCACAATAATAAGTGGGGACTCCATTGTTTCTCAGA
CAAATCTCCTATATAAACTCAAGAAGGTTGTCTATTCAACACGGAAGTTTAGAGTGACCATTTACCCAGGAAATGATACA
CTTCTTGTCATGGCAATGGTTATGAACTTCTTTATGGAAAAATGACACACAATCGGAATGCCTTTTTGAGGAAATGATAA
CTTCCTGCCAGCATAAATCCTGTATATATTTTTCTTTATTATTGACCAGATTGTTTACGCCCTTAATATGGAATTATGGA
TGCCTCATTCTTCTGTCATTCAGCAAATTCTCTTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23655.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis